Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq232 178 1e-39 seq634 159 4e-34 seq814 140 4e-28 seq354 140 4e-28 seq221 127 2e-24 seq429 125 8e-24 seq556 122 1e-22 seq457 107 2e-18 seq803 98.7 1e-15 >seq232 Length=44964 Score = 178 bits (196), Expect = 1e-39 Identities = 574/875 (66%), Gaps = 22/875 (3%) Strand=Plus/Plus Query 64297 TTCCCAATTAGGTACCCTGATTTGTGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGG 64356 ||||| || | ||| ||| | ||||| | |||||||| || || |||||| Sbjct 11191 TTCCCGATCAAGTATAATGAAATCTGGGAAATGTACAAGAAGGCAGAGGCTTCCTTCTGG 11250 Query 64357 ACGGTCGAGGAGGTTGATCTCGCCAAGGATCTCAGCGACTGGGAAAACCTAAACTCACAG 64416 || | || ||||||||||| | || ||| |||||||| | || | ||| Sbjct 11251 ACAGCTGAAGAGGTTGATCTGGGAGGAGACATCAAGCACTGGGAAGGATTGAA-TGACAA 11309 Query 64417 GAACAG-CACTTCATCAAGTTGGTCCTAGCATTCTTCGCATCAAGTGACGGAATTGTGTT 64475 | || || |||||| || || |||||||| || || ||| || || || Sbjct 11310 CGAGAGACATTTCATCTCTCATGTGCTTGCATTCTTTGCTGCATCTGATGGCATCGTAAA 11369 Query 64476 TGAGAATTTGGACCTAAATTTTACAAAGGATGTTCAGATCCCAGAGGCGCGGTCATTCTA 64535 ||||||||||| || ||| ||||| || |||||||||||||| | | || || Sbjct 11370 TGAGAATTTGGGGGTACGATTTTTGAAGGAGGTGCAGATCCCAGAGGCCAGAGCTTTTTA 11429 Query 64536 TGCGTATCA----GGGATTTAACGAAAGTATTCATGGCGAGACGTATTCGCTCATGATTG 64591 || | || | ||| | ||| ||||||| |||||| |||| ||| || ||| Sbjct 11430 TGGATTCCAAATCGCCATTGA--GAA--TATTCATAGCGAGATGTATAGTCTCCTGCTTG 11485 Query 64592 ACAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATAGAGACTGTAC 64651 | | | | ||||||||| || ||| | |||||| || || ||||| |||| Sbjct 11486 AGACATACATCAAGGATCCTGTTGAAAAGAACAAGCTGTTCCATGCCATCGAGACAGTAC 11545 Query 64652 CCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGAT-GAATCGTGGGTCGTCGTTT 64710 | | || | || ||||| || |||||||| | ||||| || || | | || || Sbjct 11546 CAGTGGTGAAGAAGAAGGCAGATTGGGCCATGAGATGGATTGAGTCCAGCGAT-TCTTTC 11604 Query 64711 GGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGT 64770 | |||| | | || || ||||| || |||||||||||||| || || || |||||| Sbjct 11605 GCAGAGCGATTGGTTGCATTCGCCTGCGTTGAAGGAATTTTCTTCTCCGGATCCTTCTGT 11664 Query 64771 TCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTG 64830 | |||| |||||| |||||||| || ||| | ||||| || | || || |||||| || Sbjct 11665 GCCATTTACTGGCTCAAAAAGCGAGGGCTGCTTCCAGGATTGACATTCTCCAACGAGTTG 11724 Query 64831 ATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAAG 64890 |||||||| || |||||||||||| ||| ||||| | | | | | ||||| Sbjct 11725 ATCTCTCGTGATGAGGGGCTCCACACAGATTTTGCATGCCTCATCTACTCCTTGCTCAAC 11784 Query 64891 GACAAAC-CATCACATGGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTGAAAA 64949 |||| | || || | | || || ||||| || | || || ||| | || || Sbjct 11785 AACAAGCTCAGCA-AGGAGAGAATCGCAGATATCGTGACGAACGCCGTTGAATTAGAGAA 11843 Query 64950 GGAATTCATTACTGCCGCGCTTCCGTGTCG-TCTCATCGGCATGGATGCCGATAAGATGA 65008 ||| || ||| | ||| || || ||||| || ||||||||| | || ||| Sbjct 11844 GGAGTTTATTTGCGACGCCCTGCC-TGTCGACCTGATCGGCATGAACGCGAGGCTCATGT 11902 Query 65009 AACAGTATATCGAATTTGTAGCAGATCGCCTGCTTACT-CAGTTTGGTAT--TAAGCCCT 65065 |||||| || ||||||||||| ||| | || || | | | || || ||| | Sbjct 11903 CACAGTACATTGAATTTGTAGCTGATAGACTTCTGGTTGCCCTGGGGAATGACAAGGTGT 11962 Query 65066 ACTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTA 65125 || ||| | | |||||||| || |||||||| ||| || |||| ||||| | Sbjct 11963 AC---AATGTTGCCAATCCATTCGATTGGATGGAACTGATTTCTTTGCAGGGAAAGACAA 12019 Query 65126 ACTTTTTTGAAAAGAGGGTAGGTGATTACTCAAAG 65160 | || || || ||||| || || || ||| |||| Sbjct 12020 ATTTCTTCGAGAAGAGAGTTGGCGAGTACCAAAAG 12054 >seq634 Length=251403 Score = 159 bits (176), Expect = 4e-34 Identities = 165/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || || || || ||||| || || || ||||| ||||| | Sbjct 209421 ATGCAAATCTTTGTGAAAACACTCACAGGGAAGACCATCACCCTGGAGGTGGAGTCTTCT 209480 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||| |||| ||||||||||||||||||||||| || || ||| Sbjct 209481 GACACTATCGAAAATGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCACCTGATCAG 209540 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | ||||| ||||| ||||| | || |||| || || ||||||| ||||| Sbjct 209541 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGGCGCACATTAGCAGATTATAAC 209600 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 |||||||||| || || | ||| | ||| | ||| Sbjct 209601 ATCCAAAAGGAGTCTACCTTGCATTTGGTCCTCCGT 209636 >seq814 Length=161544 Score = 140 bits (154), Expect = 4e-28 Identities = 261/377 (69%), Gaps = 15/377 (4%) Strand=Plus/Minus Query 24723 TTTTATCAGGCGGGTACGAGTGAGATGTTTGGCAAGGTGCAGGAGACGCCACAGTCGGAG 24782 ||||||||||| || |||| ||||||| ||||||||||||| || || || | Sbjct 132631 TTTTATCAGGCTTCCACCTCTGAGCTGTTTGGAAAGGTGCAGGAGATTCCCCAAAAGGTG 132572 Query 24783 ACCACTCCATTTTATCCGCGAAGCCCGTATGGGGTCTCAAAGGTGTTCGCGTACTGGATA 24842 ||||| || || ||||| || || |||| || ||||| |||||| ||||||||| Sbjct 132571 ACCACACCTTTCTATCCACGTTCGCCATATGCGGCAGCAAAGCTGTTCGGGTACTGGATC 132512 Query 24843 ACCAAGAACTACCGTGAGGCCCATGGGATATATGCATGCAACGGAATTCTGTTCAACCAT 24902 ||| ||||| | ||| | | || || | ||| ||||| || || ||||||||||| Sbjct 132511 ACCGTCAACTATAGAGAGTCGTACGGTATGTTTGCCTGCAATGGTATCCTGTTCAACCAC 132452 Query 24903 GAGTCGGAGCGTCGGGGACCTGA---ATTTGTTACACGAAAGATTACTCTTGGTATTGAC 24959 ||||| | || | || ||| |||||| ||| | ||||| || | ||| | | Sbjct 132451 GAGTC---CCCTCTGAGAGGTGAGACATTTGTGACAAGGAAGATCACACGAGGTCTGG-- 132397 Query 24960 CATTGGATCAAGACAAG---GG--CACCTATTG-AGCTGGGAAACCTAGATGCCAAACGT 25013 || |||||||| | | || | | || | ||||||| || ||||| || | Sbjct 132396 CA-AGGATCAAGGCTGGTTTGGATGATGCACTGTACTTGGGAAATCTCGATGCGAAGAGA 132338 Query 25014 GATTGGGGGCATGCAGCCGACTACGTCGACGCCATGTGGCGCATGCTCCAACAGAATAAG 25073 |||||||||||||| || |||||||| ||||| |||||||| ||| || | Sbjct 132337 GATTGGGGGCATGCGAAGGATTACGTCGAGATGCAGTGGCTGATGCTCCAGCAGGATGAA 132278 Query 25074 CCAGAGGATTTTGTGAT 25090 ||| |||||| |||||| Sbjct 132277 CCAAAGGATTATGTGAT 132261 >seq354 Length=2136 Score = 140 bits (154), Expect = 4e-28 Identities = 133/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 |||||||| || || |||||||| ||||| ||||| |||| |||| | ||| | || Sbjct 2135 GGCAAGACCATCACGCTTGAGGTAGAGTCGTCTGATACAATTGAAAATGTCAAGTCGAAG 2076 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 |||||||||||||| || ||||| || || ||||||||||| || |||||||| ||||| Sbjct 2075 ATTCAGGACAAGGAAGGTATTCCCCCTGATCAGCAGCGTCTCATCTTTGCTGGCAAGCAG 2016 Query 27553 CTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCAC 27602 |||||||||| || || | ||||| || || |||| ||||| || || Sbjct 2015 CTCGAGGATGGGCGCACGTTGGCAGATTACAACATCCAGAAGGAGTCTAC 1966 >seq221 Length=83180 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || ||||| || || || || ||||| || || || ||||| ||||| Sbjct 44076 ATGCAGATTTTCGTCAAAACACTGACTGGGAAGACCATAACCCTCGAGGTCGAGTCTTCA 44017 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | ||| | ||||||||||| |||||||| || || || || ||| Sbjct 44016 GATACGATTGAGAATGTCAAGTCGAAAATTCAGGATAAGGAGGGGATCCCGCCTGATCAG 43957 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || ||||| ||||| || ||||||| ||||| | ||||| || ||| Sbjct 43956 CAGAGACTGATCTTCGCTGGGAAGCAGCTTGAGGATGGGCGTACATTGGCAGATTACAAT 43897 Query 27586 GTCCAAAAGGAATCCACTCTTCA 27608 | || ||||| || || || || Sbjct 43896 ATTCAGAAGGAGTCTACACTGCA 43874 >seq429 Length=364352 Score = 125 bits (138), Expect = 8e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || || || || || ||||||||||| || || |||||| | Sbjct 146812 ATGCAGATTTTCGTTAAAACCCTGACGGGAAAAACTATTACTCTGGAAGTAGAGTCATCT 146871 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | ||| | || |||||||| || ||||| || || || || ||| Sbjct 146872 GATACGATTGAGAATGTCAAGTCGAAGATTCAGGATAAAGAGGGGATCCCACCTGATCAG 146931 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | ||||| ||||| ||||| | || |||| || ||||| || || ||||| Sbjct 146932 CAGAGATTGATTTTCGCTGGAAAGCAGTTGGAAGATGGGCGCACCCTGGCGGATTATAAC 146991 Query 27586 GTCCAAAAGGAATCCAC 27602 |||||||||| || || Sbjct 146992 ATCCAAAAGGAGTCAAC 147008 >seq556 Length=75407 Score = 122 bits (134), Expect = 1e-22 Identities = 298/447 (67%), Gaps = 10/447 (2%) Strand=Plus/Plus Query 31961 AGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACG 32020 |||| || || ||| || | |||||| || || ||| |||| | ||| | || || | Sbjct 30336 AGCGCTCGATCCCAAACATCATGGACGGGCTGAAACCTGGACAGAGGAAGATCATGTATG 30395 Query 32021 CCTGCCTCAAGAAGAACCTGTCGAGT--GACATGAAGGTGGCGCAGCTGTCGGGCTACGT 32078 | || |||| ||||| | || ||| || || |||||||| || || | || || || Sbjct 30396 CTTGTTTCAA-AAGAAA-TCTCAAGTCGGATATCAAGGTGGCACAATTGGCTGGGTATGT 30453 Query 32079 GGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCT 32138 || ||||| | || ||||| || |||||| || || ||||||||| ||| Sbjct 30454 CGCCGAGCATTCTGCATATCATCATGGCGAGAACTCCCTTTGCTCTACCATTGTCGGCCT 30513 Query 32139 TGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGG 32198 |||||||||||||| || |||| ||| | ||| || | ||| || |||||||| Sbjct 30514 GGCTCAGAACTTTGTTGGGTCAAACAACATCAACACTCTTGTTCCACAAGGTCAGTTTGG 30573 Query 32199 GACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGC 32258 || || || || || || ||| |||| ||| | || || || ||||| || || || Sbjct 30574 TACTCGTCTTCAAGGAGGGAAAGATTCTGCAAGCCCTCGATATATTTTCACTCGCCTGGC 30633 Query 32259 ACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTA---CAATTT 32315 || ||| | | |||||| | | || ||||| || | | ||| ||| Sbjct 30634 ACAGATCACGAGGAGCATTTTCCATCAAGGAGATGATGCCTTGTTAACGTATCTCAA--- 30690 Query 32316 TGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGT 32375 ||| || |||||| | | || || | ||||||| ||| | || || || | ||||| Sbjct 30691 TGAAGAGGGTCAGACGATTGAACCAGAGTTCTACGTGCCGATTCTACCCTTGGTATTGGT 30750 Query 32376 GAACGGTGCAGAAGGCATCGGAACGGG 32402 || || || ||||| |||||||| || Sbjct 30751 CAATGGAGCTGAAGGTATCGGAACAGG 30777 >seq457 Length=513114 Score = 107 bits (118), Expect = 2e-18 Identities = 158/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 64628 TGTTCAGGGCTATAGAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGT 64687 |||| |||||| | ||||| || || ||| || ||||||| ||||| ||| | Sbjct 80344 TGTTTAGGGCTGTGGAGACGGTGCCTTGTGTGCGGAAGAAGGCTGCGTGGGCGATCAAAT 80403 Query 64688 GGATGAA-TCGTGGGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGA 64746 |||| | || | | || |||| | | || | | || ||||| ||||||||||| Sbjct 80404 GGATTCAGTCATCAAT-GTGTTTTGCTGAACGGTTGGTGGCGTTTGCATGTGTGGAAGGG 80462 Query 64747 ATTTTCTTTTCTGGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCA 64806 ||| |||||| ||||| ||||||||||||| ||| | || ||| | |||||||| Sbjct 80463 ATTCACTTTTCGGGGTCTTTCTGTTCTATTTATTGGTTGAAGAAGAGATTGTTGATGCCA 80522 Query 64807 GGTCTGTCGTTTTCGAACGAGCTGATCTCTCGGGACGAGGG 64847 || || |||||||||| ||||| |||||| | || ||||| Sbjct 80523 GGGTTGACGTTTTCGAATGAGCTCATCTCTAGAGATGAGGG 80563 Score = 87.8 bits (96), Expect = 2e-12 Identities = 294/452 (65%), Gaps = 7/452 (2%) Strand=Plus/Plus Query 81309 CAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC 81368 ||| || || |||| | || || || ||||| ||||||| |||| ||| | || || Sbjct 208898 CAATTCAAGCCAGTCGAAAATATCAGCGTGCCAAGGCTCCAAGTACATGGCAAACGCTCC 208957 Query 81369 CTTGCGA---CGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACAT 81425 || | | || ||||| | || || | ||| || | || || ||||| | ||| Sbjct 208958 TTTTCTCTTCCCCCCTCCCTGATCAACATATCTGGCCGTGTCATTGAACACACGGAGCAT 209017 Query 81426 AGGGATGATACCATCTGACTGACCGTTCGTACCCACGA-TACGCGACCCCTTGGCGCGCA 81484 ||| | ||||||| || || || || || |||| || || || | || | | Sbjct 209018 AGGTACAATACCATTCGAAGTTCCATTTGTTCC-ACGAATATAAGAACCAGTCGCTCTGA 209076 Query 81485 CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCA 81544 || || || ||||||||||| |||| | ||| || || ||||||| |||| Sbjct 209077 TATTATGCATAGACAGACCGATGCCCCCTGCACTCTTGGAGATGCAAGCACACTCCTTCA 209136 Query 81545 TGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACA 81604 || |||||||| || || || ||||| || |||||| | ||| || || || | Sbjct 209137 GAGTGTCATAAATGCCTTCAATACTATCATTCTTCATGCAGATCAAAAAGCACGAAGAAA 209196 Query 81605 TCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGT 81664 |||||||| | | |||||||||||||| ||||| | || || |||| | | | Sbjct 209197 GCTGAGGGCGTGGAGTACCGGCATTGAACAGAGTTGGAGAGGCATGCGTGAACCATCTCT 209256 Query 81665 TTGACATCAGGTCATAGGTTTCCTTGAC-GCGTGGAATATCGTCACCGTGAATACCGATA 81723 |||| ||||| || || || || | || | ||||| || ||| || || | Sbjct 209257 GAGACAGCAGGTGGTATGTCTCAATGGCTGCAT-CAATATTCTCCTTGTGGATTCCAACT 209315 Query 81724 GCTACACGCATAAACATGTACTGGGGCGTCTC 81755 | || | ||| | ||||| ||| ||| |||| Sbjct 209316 GAAACTCTCATGAGCATGTGCTGTGGCCTCTC 209347 >seq803 Length=218094 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 27423 GACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTT 27482 || |||| | |||||||| || || |||||||| ||||| ||||| |||| |||| | Sbjct 217980 GATGCTTGCAGGCAAGACCATCACGCTTGAGGTAGAGTCGTCTGATACGATTGAAAATGT 218039 Query 27483 GAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAAT 27536 ||| | || |||||||||||||| || ||||| || || ||||||||||| || Sbjct 218040 CAAGTCGAAGATTCAGGACAAGGAAGGTATTCCACCTGATCAGCAGCGTCTCAT 218093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570304126585600