Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq429 145 7e-30 seq634 127 2e-24 seq354 86.0 5e-12 >seq429 Length=364352 Score = 145 bits (160), Expect = 7e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| ||||| || || |||||||||| ||||| || | || Sbjct 146812 ATGCAGATTTTCGTTAAAACCCTGACGGGAAAAACTATTACTCTGGAAGTAGAGTCATCT 146871 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||||| ||||| || ||||| || ||||| || || ||||| ||||| Sbjct 146872 GATACGATTGAGAATGTCAAGTCGAAGATTCAGGATAAAGAGGGGATCCCACCTGATCAG 146931 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||| || || || |||||||| | ||| | | ||||| ||| Sbjct 146932 CAGAGATTGATTTTCGCTGGAAAGCAGTTGGAAGATGGGCGCACCCTGGCGGATTATAAC 146991 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| || ||||| |||||| | || ||||| || || || Sbjct 146992 ATCCAAAAGGAGTCAACGTTACACTTGGTTCTTCGCTTGCGAGGGGGGAT 147041 >seq634 Length=251403 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || || || ||| | || || || || ||||| | || Sbjct 209421 ATGCAAATCTTTGTGAAAACACTCACAGGGAAGACCATCACCCTGGAGGTGGAGTCTTCT 209480 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| || ||||| ||||| || || || ||||| ||||| Sbjct 209481 GACACTATCGAAAATGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCACCTGATCAG 209540 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||| || || || |||||||| | || | | ||||| ||| Sbjct 209541 CAGCGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGGCGCACATTAGCAGATTATAAC 209600 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||||||| ||||| |||||||| | |||||| | || || || Sbjct 209601 ATCCAAAAGGAGTCTACCTTGCATTTGGTCCTCCGTTTGAGAGGAGGAAT 209650 >seq354 Length=2136 Score = 86.0 bits (94), Expect = 5e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 27015 GGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAA 27074 |||||| | || || ||||| || || |||| || | ||||| | ||||| || Sbjct 2135 GGCAAGACCATCACGCTTGAGGTAGAGTCGTCTGATACAATTGAAAATGTCAAGTCGAAG 2076 Query 27075 ATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAA 27134 ||||| ||||| ||||| || || || ||||| |||||| | || | || ||||| || Sbjct 2075 ATTCAGGACAAGGAAGGTATTCCCCCTGATCAGCAGCGTCTCATCTTTGCTGGCAAGCAG 2016 Query 27135 TTGGAAGACAGTTCGACCGTTTCC-GATTACAACATTCAAAAGGAGTCGACCTTACATTT 27193 | || || | || |||| | ||||||||||| || |||||||| || || || || Sbjct 2015 CTCGAGGATGGG-CGCACGTTGGCAGATTACAACATCCAGAAGGAGTCTACATTGCACTT 1957 Query 27194 GGTTTTGCGTTTGCGGGGTGG 27214 ||| | || ||| | || || Sbjct 1956 GGTGCTTCGCTTGAGAGGAGG 1936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434913615897600