Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq634 149 1e-30 seq429 122 2e-22 seq354 120 7e-22 seq180 93.3 1e-13 >seq634 Length=251403 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| ||||||||||||||||| || | || | |||||||||| |||||| || Sbjct 209617 GTAGACTCCTTTTGGATGTTATAATCTGCTAATGTGCGCCCATCTTCCAACTGCTTTCCA 209558 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | || || || ||||| |||| ||| ||||||||||| ||||| || Sbjct 209557 GCGAAAATCAAACGCTGCTGATCAGGTGGAATTCCCTCCTTGTCCTGAATCTTAGACTTG 209498 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || |||||||| |||||||| || ||||| || ||||| ||||| || ||||| || Sbjct 209497 ACATTTTCGATAGTGTCAGAAGACTCCACCTCCAGGGTGATGGTCTTCCCTGTGAGTGTT 209438 Query 211098 TTTACAAACACCTGCAT 211114 || ||||| | ||||| Sbjct 209437 TTCACAAAGATTTGCAT 209421 >seq429 Length=364352 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| |||||||||||||||||||| ||||| | |||||||||| |||||| || Sbjct 147008 GTTGACTCCTTTTGGATGTTATAATCCGCCAGGGTGCGCCCATCTTCCAACTGCTTTCCA 146949 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 ||||| || | | || || ||||| || | || || || ||||| ||||| || Sbjct 146948 GCGAAAATCAATCTCTGCTGATCAGGTGGGATCCCCTCTTTATCCTGAATCTTCGACTTG 146889 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTC 211097 || || || || || ||||| || || || ||||| || || |||||||| || || Sbjct 146888 ACATTCTCAATCGTATCAGATGACTCTACTTCCAGAGTAATAGTTTTTCCCGTCAGGGTT 146829 Query 211098 TTTACAAACACCTGCAT 211114 || || || | |||||| Sbjct 146828 TTAACGAAAATCTGCAT 146812 >seq354 Length=2136 Score = 120 bits (132), Expect = 7e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 210918 GTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCT 210977 || ||||| || |||||||| ||||| || | || | ||||| || ||||||||||| Sbjct 1966 GTAGACTCCTTCTGGATGTTGTAATCTGCCAACGTGCGCCCATCCTCGAGCTGCTTGCCA 2025 Query 210978 GCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTC 211037 || ||||| || || || || ||||| |||| |||||||||||||| ||||| || Sbjct 2026 GCAAAGATGAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGAATCTTCGACTTG 2085 Query 211038 ACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || ||||| || || ||||| || ||||| || ||||| ||||| ||| Sbjct 2086 ACATTTTCAATTGTATCAGACGACTCTACCTCAAGCGTGATGGTCTTGCCC 2136 >seq180 Length=124539 Score = 93.3 bits (102), Expect = 1e-13 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 139807 CTTCCAAAGAAGCACGGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAG 139866 |||||||| ||||||||||| |||||||| ||||| |||||||||| | ||||| | Sbjct 9389 CTTCCAAAAAAGCACGGAAGGGGAGGACAGTCTGCCCTGCGTTTTGCTCGTCTTCGTTTG 9330 Query 139867 GAAAAGAGGCACAACTACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTAT 139922 |||||| | || || ||| | | || ||||| |||| ||| ||||| |||||| Sbjct 9329 GAAAAGCGTCATAATTACGTTCGTAAGGTTGCTGAGATTGCAGTACAGCATTTTAT 9274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159138930561200