Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq429 104 2e-17 seq634 89.7 4e-13 >seq429 Length=364352 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || |||| ||||| | ||||| |||| ||| ||| ||||| || |||||||| || Sbjct 147038 CCCCCTCGCAAGCGAAGAACCAAGTGTAACGTTGACTCCTTTTGGATGTTATAATCCGCC 146979 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGG 39176 || || || | || || | ||| || || || || || | | |||||| || |||||| Sbjct 146978 AGGGTGCGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAATCTCTGCTGATCAGGTGGG 146919 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | | |||||| ||| || ||| |||| || | | |||||| ||||| || Sbjct 146918 ATCCC-CTCTTTATCCTGAATCTTCGACTTGACATTCTCAATCGTATCAGATGACTCTAC 146860 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 |||| || ||| ||||||||||||| |||||||| || || |||||| Sbjct 146859 TTCCAGAGTAATAGTTTTTCCCGTCAGGGTTTTAACGAAAATCTGCATC 146811 >seq634 Length=251403 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| || || | |||||||| | || ||| ||||| || |||||||| || Sbjct 209647 CCTCCTCTCAAACGGAGGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAATCTGCT 209588 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 | ||| || | || || | ||| || || || || || | ||||||||| || | || Sbjct 209587 AATGTGCGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGCTGATCAGGTGGA 209528 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||| |||||| || || |||| | | | || || |||||||| Sbjct 209527 ATTCCCTCCTTGTCCTGAATCTTAGACTTGACATTTTCGATAGTGTCAGAAGACTCCACC 209468 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 |||| ||||| | || || || || ||||| |||||||||||||||| Sbjct 209467 TCCAGGGTGATGGTCTTCCCTGTGAGTGTTTTCACAAAGATTTGCATCT 209419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429540993123440