Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq429 129 4e-25 seq354 96.9 2e-15 seq221 91.5 1e-13 >seq429 Length=364352 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||||||||| ||||||||||| || ||||| ||||| || || | Sbjct 146812 ATGCAGATTTTCGTTAAAACCCTGACGGGAAAAACTATTACTCTGGAAGTAGAGTCATCT 146871 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | || ||| || ||||| || | || || ||||| Sbjct 146872 GATACGATTGAGAATGTCAAGTC-GAAGATTCAGGATAAAGAGGGGATCCCACCTGATCA 146930 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || || || || || || ||||||| | ||||| | | ||||| || Sbjct 146931 GCAGAGATTGATTTTCGCTGGAAAGCAGTTGGAAGATGGGCGCACCCTGGCGGATTATAA 146990 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| ||||| ||||| || ||||| || ||| | | |||||||| || Sbjct 146991 CATCCAAAAGGAGTCAACGTTACACTTGGTTCTTCGCTTGCGAGGGGG 147038 >seq354 Length=2136 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23637 GGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAA 23696 ||| || || ||||| || || || || || | || || |||||| | || || Sbjct 2136 GGGCAAGACCATCACGCTTGAGGTAGAGTCGTCTGATACAATTGAAAATGTCAAGTCGAA 2077 Query 23697 AATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACA 23756 ||| ||||| |||||| | || || ||||| |||||| | || ||||| ||||| || Sbjct 2076 GATTCAGGACAAGGAAGGTATTCCCCCTGATCAGCAGCGTCTCATCTTTGCTGGCAAGCA 2017 Query 23757 ACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTT 23816 || || || | ||||| || | ||||||||||| || || ||||| ||||| || || Sbjct 2016 GCTCGAGGATGGGCGCACGTTGGCAGATTACAACATCCAGAAGGAGTCTACATTGCACTT 1957 Query 23817 AGTTTTAAGGTTGCGAGGAGGAT 23839 || | | ||| ||||||||| Sbjct 1956 GGTGCTTCGCTTGAGAGGAGGAT 1934 >seq221 Length=83180 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| ||||| || || || || || || || ||||| || || || | Sbjct 44076 ATGCAGATTTTCGTCAAAACACTGACTGGGAAGACCATAACCCTCGAGGTCGAGTCTTCA 44017 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | |||||| || || || || | ||||| ||||| Sbjct 44016 GATACGATTGAGAATGTCAAGTC-GAAAATTCAGGATAAGGAGGGGATCCCGCCTGATCA 43958 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || || || || || || || || || | || || || | |||||||| Sbjct 43957 GCAGAGACTGATCTTCGCTGGGAAGCAGCTTGAGGATGGGCGTACATTGGCAGATTACAA 43898 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || ||||| ||| | || || || | ||||||| |||||| Sbjct 43897 TATTCAGAAGGAGTCTACACTGCACTTGGTGCTTCGGTTGCGTGGAGGA 43849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338005974847040