Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq879 131 4e-25 seq354 123 6e-23 seq221 116 9e-21 seq880 100 7e-16 >seq879 Length=37587 Score = 131 bits (144), Expect = 4e-25 Identities = 189/264 (72%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 7456 TTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAAGGTTAGAATTA 7515 |||||||| ||| ||||| || | |||||| | |||||||| | || | | ||| | Sbjct 26505 TTTGGTGGTTTTGCTGGTGTTCTTGGTACTGTGTTTTCTATTTTAATTCGTATGGAACTC 26446 Query 7516 GCTGCTCCGGGTTCTCAAATATT-GAGTGGTAATAGCCAACTTTACAACGTTATTATTAC 7574 || || || | ||| | || ||| |||||| ||| | || || || | ||||| Sbjct 26445 GCACAGCCTGGAACACAAGTCTTAGAG-GGTAATTATCAAGTGTATAATGTGTTAATTAC 26387 Query 7575 GGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGG 7634 || || |||||| | |||||||||||| | || |||||||| | |||| ||||| || Sbjct 26386 TGCCCACGCCTTTTTAATGATTTTCTTTATGGTGATGCCGGTACTTTTAGGTGGTTTTGG 26327 Query 7635 AAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAA 7694 |||| || |||| | | |||||||| || |||||||| |||||| | || || || Sbjct 26326 GAATTTCTTTCTTCCCATTCTCATTGGTGCCCCAGATATGGCATTTCCACGTCTGAATAA 26267 Query 7695 TATAAGTTTTTGATTACTACCGCC 7718 ||| |||||||| || |||| || Sbjct 26266 TATTAGTTTTTGGCTATTACCACC 26243 Score = 111 bits (122), Expect = 4e-19 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 372624 GGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTGT 372683 |||| |||| |||| ||||||||||||||||||||||||||||||||| || |||| || Sbjct 16925 GGTGGCACAGTATAGGGGGTAGCGACTGTTTACTAAAAACACAGGACTCTGCCAAGTGGT 16984 Query 372684 AAAACGATGTATAGGGTCTGACAC 372707 || |||| |||||||||||||||| Sbjct 16985 AACACGACGTATAGGGTCTGACAC 17008 Score = 100 bits (110), Expect = 7e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| || | |||| |||| ||||||||||||| |||||| ||| | | | Sbjct 23884 TGGTAAGGTTATGCGCGTAGTATCGAATTAAACCACATGTTCCACCACTTGTGTGAGCCC 23943 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATATTTA-CGC 7854 ||||| || ||||||||||||| |||||| ||||| | |||||| ||| ||||| ||| Sbjct 23944 CCGTCTATTCCTTTGAGTTTTAATCTTGCGATCGTACTCCTCAGGCGGACCATTTACCGC 24003 Query 7855 GTTAGCT 7861 ||||||| Sbjct 24004 GTTAGCT 24010 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||||||||||||||||||| || ||||| || || ||||| || || |||||||| Sbjct 4668 GAAAATTTGACCATCAGTAATAGAAATCACATTGGTTGGAATATACGCGGACACATCACC 4609 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 ||||| ||||| | || ||||| ||||||| ||| ||||| Sbjct 4608 AGCTTGAGTTTCAATCACTGGTAACGCTGTTAAACTTCCGCCACC 4564 Score = 93.3 bits (102), Expect = 1e-13 Identities = 86/105 (82%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCA 6824 |||||||||||||| |||||| ||||||||| | |||||||| | | || || |||| Sbjct 24551 TTGAGAGAATGATCGGCCACACTGGGACTGAGACACGGCCCA-GACGCTTACGAGCGGCA 24493 Query 6825 GCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 ||||||| |||| || ||||||||||| |||| ||||| ||| || Sbjct 24492 GCAGTGGGGAATCTTGGACAATGGGCGCAAGCCTGATCCAGTGAT 24448 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| ||||| |||||||| || || | |||||||| || | |||||| || || | Sbjct 25833 ATACTTCTGGATGTCCAAAAAACCAAAAAAGGTGTTGATAGAGTACAGGATCCCCACCAC 25892 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGT 370767 | | |||||||||||| | ||||||||||||| ||| || Sbjct 25893 CAGCTGGATCAAAAAATGTGGTATTAAAATTTCGATCTGT 25932 >seq354 Length=2136 Score = 123 bits (136), Expect = 6e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || || |||| |||||||| ||||| || | |||||| || |||||||| ||| Sbjct 1966 GTAGACTCCTTCTGGATGTTGTAATCTGCCAACGTGCGCCCATCCTCGAGCTGCTTGCCA 2025 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || ||||| || || || || || || ||||||||||||||||| || ||||| ||| Sbjct 2026 GCAAAGATGAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGAATCTTCGACTTG 2085 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 ||| ||| || || || || | || || || | |||||| ||||||||| Sbjct 2086 ACATTTTCAATTGTATCAGACGACTCTACCTCAAGCGTGATGGTCTTGCCC 2136 >seq221 Length=83180 Score = 116 bits (128), Expect = 9e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || || || || || | ||||||||| ||||| || | |||||| Sbjct 43865 AGCACCAAGTGCAGTGTAGACTCCTTCTGAATATTGTAATCTGCCAATGTACGCCCATCC 43924 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||||||||||||||| |||| || || || ||||| || || ||||| || Sbjct 43925 TCAAGCTGCTTCCCAGCGAAGATCAGTCTCTGCTGATCAGGCGGGATCCCCTCCTTATCC 43984 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || || || ||| ||| || || || ||||| | || || || | || || ||| Sbjct 43985 TGAATTTTCGACTTGACATTCTCAATCGTATCTGAAGACTCGACCTCGAGGGTTATGGTC 44044 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || |||| ||||| | ||| | ||||| Sbjct 44045 TTCCCAGTCAGTGTTTTGACGAAAATCTGCAT 44076 >seq880 Length=74269 Score = 100 bits (110), Expect = 7e-16 Identities = 99/127 (78%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| ||||| ||||| ||| ||||||||||||| ||||||||||| | | | Sbjct 73430 TGGTAAGGTTCTTCGCGTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 73489 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGAATA-TTTACGC 7854 |||||| || |||||||||| | |||||| | || | | |||| || ||| || |||| Sbjct 73490 CCGTCAATTCCTTTGAGTTTCACTCTTGCGAGCATACTCCCCAGGCGGGATACTTCACGC 73549 Query 7855 GTTAGCT 7861 ||||||| Sbjct 73550 GTTAGCT 73556 Score = 95.1 bits (104), Expect = 3e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| ||||| || || |||||||| || |||||||| |||||||| || Sbjct 56998 GAAAATTTGACCATCTGTAATTGAAATTACATTTGTTGGAATATAAGCTGAAACATCCCC 56939 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGT 4559 |||||||||| ||||| ||||| || || Sbjct 56938 CTCTTGTGTTTCTACAACTGGTAATGCAGT 56909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192517754210720