Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq232 251 1e-61 seq457 201 2e-46 >seq232 Length=44964 Score = 251 bits (278), Expect = 1e-61 Identities = 410/589 (70%), Gaps = 6/589 (1%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 ||||||||||| || || || ||||| | | || || ||||| || ||||| | Sbjct 11762 CATGCAAAATCTGTGTGGAGCCCCTCATCACGAGAGATCAACTCGTTGGAGAATGTCAAT 11703 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || || | || || || ||||||||||| | || || ||| ||||| || ||||| Sbjct 11702 CCTGGAAGCAGCCCTCGCTTTTTGAGCCAGTAAATGGCACAGAAGGATCCGGAGAAGAAA 11643 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG---TGT 48317 || ||||| ||| || ||||| | || |||| || || | ||| || | Sbjct 11642 ATTCCTTCAACGCAGGCGAATGCAACCAATCGCTCTGCGAAA---GAATCGCTGGACTCA 11586 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 ||||| | |||||||| ||||||||||| || || | ||| || || |||| Sbjct 11585 ATCCATCTCATGGCCCAATCTGCCTTCTTCTTCACCACTGGTACTGTCTCGATGGCATGG 11526 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 || || ||| |||||| ||| || | ||| || || | | ||||||||||| Sbjct 11525 AACAGCTTGTTCTTTTCAACAGGATCCTTGATGTATGTCTCAAGCAGGAGACTATACATC 11466 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 ||| |||||||| ||||| || || || ||||| |||||| ||| || |||| |||| Sbjct 11465 TCGCTATGAATATTCTCAATGGCGATTTGGAATCCATAAAAAGCTCTGGCCTCTGGGATC 11406 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 || |||||| | |||||||| | |||||||||||||||| || |||||| |||||| Sbjct 11405 TGCACCTCCTTCAAAAATCGTACCCCCAAATTCTCATTTACGATGCCATCAGATGCAGCA 11346 Query 48558 AAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCA 48617 || ||||| | ||||| || |||| | | |||||| | ||| | | ||||| Sbjct 11345 AAGAATGCAAGCACATGAGAGATGAAATGTCTCTCGTTGTCATTCAATCCTTCCCAGTGC 11286 Query 48618 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTA 48677 ||||| ||| | | ||| || |||||||||||||| || || |||||||| || || Sbjct 11285 TTGATGTCTCCTCCCAGATCAACCTCTTCAGCTGTCCAGAAGGAAGCCTCTGCCTTCTTG 11226 Query 48678 TACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTAT 48726 ||||| | ||| || ||| | || | ||| ||||| | || |||| || Sbjct 11225 TACATTTCCCAGATTTCATTATACTTGATCGGGAACAAGACGAATCGAT 11177 >seq457 Length=513114 Score = 201 bits (222), Expect = 2e-46 Identities = 472/707 (67%), Gaps = 4/707 (1%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 ||| | |||||||| ||||| |||||||| |||||||| || | | || Sbjct 208709 CTCGCGTTCATATTTCAAATATAATTCTTCAAATTGTTCTCCCCAGCAGTCGGCAAGACC 208768 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 |||| ||||||||| || | ||| ||||| || || | | | ||| | || |||||| Sbjct 208769 AGGGGCTTCATTTGGACAAAACAAGGACCACTCTCCTCCAGCTTCAACCCTTTGCATAAA 208828 Query 78017 GAGATCAGGTATCCATAGAGCAATA-AATAGATCTCGGGTTCTATGTTCTTCATTTCCTG 78075 |||||| || ||||| | | | || || | ||||| | || |||||| || || Sbjct 208829 GAGATCTGGGATCCACA-ACCCGTAGAACAAATCTCTTGCCCTCGCTTCTTCTTTGCCGT 208887 Query 78076 TATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTG 78135 |||||| | | || || | || | |||||||| ||||| || || | || || | Sbjct 208888 GATTCTTCCTCAATTCAAGCCAGTCGAAAATATCAGCGTGCCAAGGCTCCAAGTACATGG 208947 Query 78136 CCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAA 78195 | | |||| || || ||||||||||| | ||||||||| |||| ||| | | Sbjct 208948 CAAACGCTCCTTTTCTCTTCCCCCCTCCCTGATCAACATATCTGGCCGTGTCATTGAACA 209007 Query 78196 CTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCAC 78255 | | | ||| || | |||||| || || ||||||||||||||| ||||||| ||| Sbjct 209008 CACGGAGCATAGGTACAATACCATTCGAAGTTCCATTTGTTCCACGAATATAAGAACCAG 209067 Query 78256 TTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGC 78315 | || | |||||| || || | || || || ||||| |||| || || ||| | Sbjct 209068 TCGCTCTGATATTATGCATAGACAGACCGATGCCCCCTGCACTCTTGGAGATGCAAGCAC 209127 Query 78316 AACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAAC 78375 | |||| || || || || || || ||||| |||| | ||||| | | ||| | Sbjct 209128 ACTCCTTCAGAGTGTCATAAATGCCTTCAATACTATCATTCTTCATGCAGATCAAAAAGC 209187 Query 78376 AGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAA 78435 | ||| | ||| | | ||| || ||||| || | || ||||| |||||||| | Sbjct 209188 ACGAAGAAAGCTGAGGGCGTGGAGTACCGGCATTGAACAGAGTTGGAGAGGCATGCGTGA 209247 Query 78436 ACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTAT-GTCCCATTGATGA 78494 ||||| | | ||| || || | |||||| ||||| |||| || || || | ||| || Sbjct 209248 ACCATCTCTGAGACAGCAGGTGGTATGTCTCAATGGCTGCATCAATATTCTCCTTG-TGG 209306 Query 78495 ATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATT 78554 ||||| || | || | ||| | ||| ||||| || || || || | ||| | Sbjct 209307 ATTCCAACTGAAACTCTCATGAGCATGTGCTGTGGCCTCTCCACGACACGACCATTGACC 209366 Query 78555 TTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 78601 | | ||| ||||| |||| |||||| ||||||||||| | ||| Sbjct 209367 CTGAGCAAATATGAACGCTCCAGAGTTTTGAAACCAAAATAATCGTA 209413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694661158643200