Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq232 242 5e-59 seq457 233 3e-56 >seq232 Length=44964 Score = 242 bits (268), Expect = 5e-59 Identities = 408/589 (69%), Gaps = 6/589 (1%) Strand=Plus/Minus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 ||||||||||| || || || ||||| | | || || ||||| || ||||| | Sbjct 11762 CATGCAAAATCTGTGTGGAGCCCCTCATCACGAGAGATCAACTCGTTGGAGAATGTCAAT 11703 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 || || | || || |||||||||||||| | || || ||| ||||| || ||||| Sbjct 11702 CCTGGAAGCAGCCCTCGCTTTTTGAGCCAGTAAATGGCACAGAAGGATCCGGAGAAGAAA 11643 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTA---TGA 46806 || ||||| || |||||||| || | || |||| || || | ||| | | | Sbjct 11642 ATTCCTTCAACGCAGGCGAATGCAACCAATCGCTCTGCGAAA---GAATCGCTGGACTCA 11586 Query 46807 ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTA 46866 ||||| || |||||||| ||||| ||||| || || | ||| || || |||| Sbjct 11585 ATCCATCTCATGGCCCAATCTGCCTTCTTCTTCACCACTGGTACTGTCTCGATGGCATGG 11526 Query 46867 AAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATT 46926 || || ||| |||||| || ||| || | ||||| || | | ||||||||||| Sbjct 11525 AACAGCTTGTTCTTTTCAACAGGATCCTTGATGTATGTCTCAAGCAGGAGACTATACATC 11466 Query 46927 TCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATC 46986 || |||||| || ||||| || || || ||||| |||||| ||| || || | ||| Sbjct 11465 TCGCTATGAATATTCTCAATGGCGATTTGGAATCCATAAAAAGCTCTGGCCTCTGGGATC 11406 Query 46987 TGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCA 47046 || ||||| | |||||||| | |||||||||||| || || |||||| |||||| Sbjct 11405 TGCACCTCCTTCAAAAATCGTACCCCCAAATTCTCATTTACGATGCCATCAGATGCAGCA 11346 Query 47047 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCA 47106 || ||||| | ||||| || |||| | | || | | | ||| | | ||||| Sbjct 11345 AAGAATGCAAGCACATGAGAGATGAAATGTCTCTCGTTGTCATTCAATCCTTCCCAGTGC 11286 Query 47107 TTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTA 47166 ||||| ||| | | ||| || ||||||||||||||||| || |||||||| || || Sbjct 11285 TTGATGTCTCCTCCCAGATCAACCTCTTCAGCTGTCCAGAAGGAAGCCTCTGCCTTCTTG 11226 Query 47167 TACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTAT 47215 ||||| | ||| || ||| ||| | |||||| || | || |||| || Sbjct 11225 TACATTTCCCAGATTTCATTATACTTGATCGGGAACAAGACGAATCGAT 11177 >seq457 Length=513114 Score = 233 bits (258), Expect = 3e-56 Identities = 479/707 (68%), Gaps = 4/707 (1%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 ||| | |||||||| |||||| |||||||| |||||||| || | | ||| Sbjct 208709 CTCGCGTTCATATTTCAAATATAATTCTTCAAATTGTTCTCCCCAGCAGTCGGCAAGACC 208768 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 ||| |||||| ||||| | ||| |||||||| || | | | ||||| || |||||| Sbjct 208769 AGGGGCTTCATTTGGACAAAACAAGGACCACTCTCCTCCAGCTTCAACCCTTTGCATAAA 208828 Query 76612 GAGATCAGGTATCCATAGAGCAATA-AATAGATCTCGGGTTCTACGTTCTTCATTTCCTG 76670 |||||| || ||||| | | | || || | ||||| | || |||||| || || Sbjct 208829 GAGATCTGGGATCCACA-ACCCGTAGAACAAATCTCTTGCCCTCGCTTCTTCTTTGCCGT 208887 Query 76671 TATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCG 76730 |||||| | | || || | || | |||||||| ||||| || || | || || | Sbjct 208888 GATTCTTCCTCAATTCAAGCCAGTCGAAAATATCAGCGTGCCAAGGCTCCAAGTACATGG 208947 Query 76731 CCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAA 76790 | | | || || || ||||||||||| | ||||||||| |||| ||| | | Sbjct 208948 CAAACGCTCCTTTTCTCTTCCCCCCTCCCTGATCAACATATCTGGCCGTGTCATTGAACA 209007 Query 76791 CTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCAC 76850 | | | ||| || | ||| || || || || |||||||||||| ||||||| ||| Sbjct 209008 CACGGAGCATAGGTACAATACCATTCGAAGTTCCATTTGTTCCACGAATATAAGAACCAG 209067 Query 76851 ATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 76910 || | |||||| ||||| || || || || ||||| | || ||||| ||||| Sbjct 209068 TCGCTCTGATATTATGCATAGACAGACCGATGCCCCCTGCACTCTTGGAGATGCAAGCAC 209127 Query 76911 AGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAAC 76970 | |||| |||||||| ||||| || |||||||||| | ||||| | | ||| | Sbjct 209128 ACTCCTTCAGAGTGTCATAAATGCCTTCAATACTATCATTCTTCATGCAGATCAAAAAGC 209187 Query 76971 AGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGA 77030 | ||| | ||| | | ||| || ||||| |||| || ||||| ||||| |||| Sbjct 209188 ACGAAGAAAGCTGAGGGCGTGGAGTACCGGCATTGAACAGAGTTGGAGAGGCATGCGTGA 209247 Query 77031 ACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATA-TCCCATTGATGA 77089 ||||| | | ||| || || | |||||| ||||| |||| || ||| || | ||| || Sbjct 209248 ACCATCTCTGAGACAGCAGGTGGTATGTCTCAATGGCTGCATCAATATTCTCCTTG-TGG 209306 Query 77090 ATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATT 77149 ||||| || | || | ||| | ||| ||||| || | || || | ||| | Sbjct 209307 ATTCCAACTGAAACTCTCATGAGCATGTGCTGTGGCCTCTCCACGACACGACCATTGACC 209366 Query 77150 TTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 77196 | | ||| ||||| |||| |||||| ||||||||||| | ||| Sbjct 209367 CTGAGCAAATATGAACGCTCCAGAGTTTTGAAACCAAAATAATCGTA 209413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712926557721600