Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq880 731 0.0 >seq880 Length=74269 Score = 731 bits (810), Expect = 0.0 Identities = 753/985 (76%), Gaps = 0/985 (0%) Strand=Plus/Minus Query 183196 TTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACTG 183255 || || || ||| | || |||||| | ||||| | || | ||||||||||| | | Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 183256 ATGATTCCAACTCTGTTGGCAGCAACCATCTGCTTCATCGTTGCCTTCGTCGCTGCTCCT 183315 ||||| || ||||| || | ||||| | |||||| | || || ||||||||||| Sbjct 61264 ATGATCCCTACTCTATTAACTGCAACTACAGTATTCATCATCGCATTTATCGCTGCTCCT 61205 Query 183316 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACAAC 183375 || || || ||||| || ||||| || || ||| |||| || | | || || |||||| Sbjct 61204 CCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAAC 61145 Query 183376 ATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCATC 183435 |||||||| ||||| |||||||| |||| ||||| ||||| | || ||||| || ||| Sbjct 61144 ATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAATC 61085 Query 183436 TGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAGTC 183495 |||||||| || || | ||||||||| | || |||||||||||||||||| | || || Sbjct 61084 TGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGTA 61025 Query 183496 TTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACCGT 183555 | || ||| || | || || | | ||||||||||||||||||||||| |||| |||| Sbjct 61024 TGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCGT 60965 Query 183556 CTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCGCT 183615 | ||||||||||| |||||| ||||||||| ||||| |||||||| || || ||| Sbjct 60964 TTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGCT 60905 Query 183616 GTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTATGCCCCTGGGTATC 183675 || ||| | | || || |||||||||||||||| |||||||||||| | |||||| Sbjct 60904 GTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTATC 60845 Query 183676 AGTGGCACCTTTAACTATATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCC 183735 || || || |||| |||||||| |||||||| |||||||||||| | |||||||| Sbjct 60844 TCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCCA 60785 Query 183736 TTCCACATGCTGGGTGTCGCTGGTGTCTTCGGTGGTTCTCTGTTCAGTGCAATGCACGGT 183795 ||||| ||| | ||||| |||||||| || |||||||| | ||| || ||||||||| Sbjct 60784 TTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGT 60725 Query 183796 TCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACTGAGTCTGAGTCACAGAACTATGGT 183855 || || || ||||| || | | |||||||| ||||| || ||| ||| | ||| Sbjct 60724 TCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAGGT 60665 Query 183856 TACAAGTTCGGTCAAGAAGAAGAGACCTACAACATTGTCGCTGCTCATGGATACTTTGGT 183915 ||||| || |||||||||||||| || |||||||| || ||||||||||| ||||||||| Sbjct 60664 TACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGGT 60605 Query 183916 CGTCTGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGCT 183975 ||| | |||||||| || ||||| |||||||| |||||||| | ||||||||| | ||| Sbjct 60604 CGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAGCT 60545 Query 183976 GCTTGGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGGCATTTAAC 184035 ||||||||||| || || || ||||| |||||| | ||| || ||||||||||||||| Sbjct 60544 GCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAAC 60485 Query 184036 CTGAATGGTTTTAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTCCTGAACACC 184095 | |||||||| ||||||||||| || | | ||| ||||||||||| | ||||| Sbjct 60484 TTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACACT 60425 Query 184096 TGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCT 184155 ||||| || || | ||||||||| | || || ||||| ||||| || | |||||| Sbjct 60424 TGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATGCT 60365 Query 184156 CACAACTTCCCTCTCGACCTTGCTG 184180 |||||||| || || || | |||| Sbjct 60364 CACAACTTTCCACTTGATTTAGCTG 60340 Score = 462 bits (512), Expect = 3e-125 Identities = 703/1001 (70%), Gaps = 0/1001 (0%) Strand=Plus/Plus Query 185973 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGATTACTTCTTTTT 186032 |||||||||||| || || || || || ||||| || |||||||| ||| | | || Sbjct 49515 GATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGTTTATTATTATTA 49574 Query 186033 CCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGCACAACGTTTGTTACGAGCTGG 186092 || ||||||| | ||| | ||||||||| | ||||| | || |||||||| ||| Sbjct 49575 CCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTTGTTACATCATGG 49634 Query 186093 TATACCCACGGGTTGGCGTCTTCTTACCTTGAGGGTGCTAATTTTCTCACGGCAGCAGTG 186152 ||||| || || || || ||||| | | || ||| |||||| | || || ||||| Sbjct 49635 TATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAATTTCTTAACAGCTGCAGTT 49694 Query 186153 TCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAA 186212 || || ||||| | |||||||||||| | | || | ||||| || || | ||| Sbjct 49695 TCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGCCCAGAAGCACAA 49754 Query 186213 GGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGA 186272 || || | | || |||| ||| | || || | |||| |||||| || | || || Sbjct 49755 GGCGACTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTTGCATTACATGGT 49814 Query 186273 GCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCGTCTCGTAGGTATC 186332 | |||||| | || ||||| ||| | || || ||||| || ||| ||| || Sbjct 49815 TCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGTTCAGTAAAAATT 49874 Query 186333 CGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCCTC 186392 |||||||| || || || ||||| || | || || || || || || || ||| | Sbjct 49875 CGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCGTATCAGTTTTCTTA 49934 Query 186393 ATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATC 186452 ||||| ||| | || || || |||||||| || || ||||| || || |||||| Sbjct 49935 ATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGGTGTTGCCGCAATC 49994 Query 186453 TTTAGATTCCTGTTGTTCCTCCAAGGATTCCACAACTGGACGTTGAATCCATTCCACATG 186512 || |||| | | ||| ||||||| ||||| |||||||| || || |||||||| ||| Sbjct 49995 TTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTCCATATG 50054 Query 186513 ATGGGTGTAGCAGGTATCCTTGGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTA 186572 ||||||||||| ||| | | |||| || | || | || |||||||||| |||||| Sbjct 50055 ATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCCATGGTGCAACTGTA 50114 Query 186573 GAAAATACTCTTTATGAAGATGGCGAACAAGCAAACACATTCAAAGCATTCGATACGACG 186632 ||||| || | | ||||||||| || ||||| |||||| ||||| | | || Sbjct 50115 GAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCATTTAACCCAACT 50174 Query 186633 CAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCGGA 186692 |||| |||||||| ||||| ||||| |||||||| | ||||||||||| || || || Sbjct 50175 CAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGTCACAAATTTTTGGT 50234 Query 186693 ATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTATGGGT 186752 | || ||| ||||| |||||| | |||||||| ||| | ||||| || || | ||| Sbjct 50235 GTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGT 50294 Query 186753 CTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATGACTTT 186812 | |||| | | |||||| | | ||| | ||| | ||| | ||||| ||||| ||| Sbjct 50295 TTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGCTTTAAACTTACGTGCATATGATTTT 50354 Query 186813 GTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAAT 186872 ||| ||| || | | || || || |||||||| ||||| || |||||||| || ||| Sbjct 50355 GTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACTTTCTATACAAAAAAT 50414 Query 186873 ATCCTATTGAATGAAGGTCTACGTGCCTGGATGGCACCAGTGGATCAACCACATGAAAAC 186932 |||| |||||||| | || || |||||||| | ||||| || |||||||| Sbjct 50415 CATTTATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAA 50474 Query 186933 TTTGTATTTCCTGAAGAAGTGTTGCCAAGAGGCAACGCTCT 186973 || ||||| || || || || || ||| | || |||||||| Sbjct 50475 TTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTCT 50515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622063557225600