Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq880 702 0.0 >seq880 Length=74269 Score = 702 bits (778), Expect = 0.0 Identities = 749/986 (76%), Gaps = 2/986 (0%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 || ||| | ||||||||| || || || ||||| || |||||||||| || || | Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 163988 ATGATTCCCTGC-CTGCTGGCAGCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCC 164046 ||||| |||| | || | | || |||||| ||||||||||| || |||| |||||| Sbjct 61264 ATGAT-CCCTACTCTATTAACTGCAACTACAGTATTCATCATCGCATTTATCGCTGCTCC 61206 Query 164047 TCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 164106 ||| || || |||||||| ||||| || || || ||||||| | | || || ||||| Sbjct 61205 TCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAA 61146 Query 164107 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 164166 ||||||||| ||||| ||| | || |||| ||||| || ||| | || |||||||| || Sbjct 61145 CATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAAT 61086 Query 164167 CTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGT 164226 ||||||||| || | | || || ||| | |||||||||||||||| |||| | ||||| Sbjct 61085 CTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 61026 Query 164227 GTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCG 164286 | || ||| | | || | | | ||||||||||||||||||||||| | |||| ||| Sbjct 61025 ATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 60966 Query 164287 TCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGC 164346 | | ||||||||||| ||||| || || ||||| || || || |||||||| | || Sbjct 60965 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 60906 Query 164347 AGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCAT 164406 || ||| | | || || |||||||||||||||||||||||| ||||| | || || Sbjct 60905 TGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTAT 60846 Query 164407 CTCTGGAACCTTCAACTACATGTTGGTCTTCCAGGCTGAGCACAACATCCTCATGCACCC 164466 ||| || || ||||||| |||| | || ||||| ||||||||||||||| | |||||||| Sbjct 60845 CTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCC 60786 Query 164467 CTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCACGG 164526 ||||||||| | || || || ||||| ||||| ||||| | ||| || |||||||| Sbjct 60785 ATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 60726 Query 164527 TTCGCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAATGAGTCCCAGAACTATGG 164586 ||| || || |||||||| | | ||||| || || ||||| || || ||| | || Sbjct 60725 TTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAGG 60666 Query 164587 TTACAAGTTTGGTCAGGAAGAAGAAACCTACAACATCGTTGCCGCTCACGGTTACTTTGG 164646 |||||| |||||||| ||||||||||| ||||||||||| || ||||| ||||||||||| Sbjct 60665 TTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGG 60606 Query 164647 TCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGC 164706 |||| | || |||||||||||||| || |||||||| ||||| | ||||||||| | || Sbjct 60605 TCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAGC 60546 Query 164707 AGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGGCATTCAA 164766 || ||||| || || ||||| ||||| |||||| | || || || |||||||| || Sbjct 60545 TGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAA 60486 Query 164767 CCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACAC 164826 | | || ||||||||||||||||| || | | ||| || |||||||| ||||||| Sbjct 60485 CTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACAC 60426 Query 164827 CTGGGCAGACGTTCTCAACCGTGCTGGTCTGGGCATGGAAGTGATGCACGAGCGTAATGC 164886 ||||| || || | ||||||||| | || || ||||| ||||| || | ||||| Sbjct 60425 TTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATGC 60366 Query 164887 TCACAACTTCCCTCTCGACCTTGCTG 164912 ||||||||| || || || | |||| Sbjct 60365 TCACAACTTTCCACTTGATTTAGCTG 60340 Score = 497 bits (550), Expect = 1e-135 Identities = 737/1033 (71%), Gaps = 20/1033 (2%) Strand=Plus/Plus Query 165147 GGTTGGTTCGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGG 165206 |||| ||||| | |||| ||||||||| | || |||||||| ||||| || ||| Sbjct 49497 GGTTTATTCGACATTGTTGATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGG 49556 Query 165207 TCTGGACTTCTTCTTTTTCCCAC-TGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGAC 165265 ||||| || || || || || ||||||| | || | || || ||| | ||||| | Sbjct 49557 TCTGGT-TTATTATTATTACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAAT 49615 Query 165266 TACTTTCGTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAA 165325 ||| || || || |||||||| || || | || ||| | | | || ||| || Sbjct 49616 TACATTTGTTACATCATGGTATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAA 49675 Query 165326 CTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTC 165384 ||||||| | || ||||||||||| || ||| | |||||||||||| | | | Sbjct 49676 -TTTCTTAACAGCTGCAGTTTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTAT 49734 Query 165385 TATGGGGTCCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGA 165444 ||||||| || || | ||||| ||||| | || ||||| ||| | || || | |||| Sbjct 49735 TATGGGGCCCAGAAGCACAAGGCGACTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGA 49794 Query 165445 CTTTTGTGGCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAAC 165504 ||||||| || | || || | ||||| | || ||||| ||| | || || ||||| Sbjct 49795 CTTTTGTTGCATTACATGGTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGA 49854 Query 165505 TGGCACGACTTATCGGTA----TTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATT 165560 | ||||| || ||| ||||||| || || || || |||||||| | || ||| Sbjct 49855 TTGCACGT----TCAGTAAAAATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATT 49910 Query 165561 GCTGTATTCGTTAGTGTTTTTCTTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCA 165620 || || ||||| ||||| | || |||||| | || ||||| ||||||||| ||| Sbjct 49911 GCAGTTTTCGTATCAGTTTTCTTAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCA 49970 Query 165621 CCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAAC 165680 || || || || || |||||||||||||| | || ||| ||||||| ||||||||| Sbjct 49971 CCAAGTTTTGGTGTTGCCGCAATCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAAC 50030 Query 165681 TGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGCGGAGCATTGCTT 165740 ||||| | || || || || |||||||| ||||| ||| | ||||| | ||| || || Sbjct 50031 TGGACTTTAAACCCATTCCATATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTA 50090 Query 165741 TCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAAC 165800 | ||| || ||||||| || ||||| || || || | |||||||||||| ||||| Sbjct 50091 TGTGCTATCCATGGTGCAACTGTAGAAAACACATTATTTGAAGATGGTGATGGTGCAAAT 50150 Query 165801 ACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAAC 165860 || ||| |||||| | ||||| | || ||||| ||||| ||||| ||||| || Sbjct 50151 ACATTCCGTGCATTTAACCCAACTCAAGCTGAAGAAACATATTCAATGGTAACTGCGAAT 50210 Query 165861 CGTTTCTGGTCTCAGATTTTTGGTATTGC--TTTCAGCAATAAGCGTTGGCTTCACTTCT 165918 ||||||||||| || ||||||||| | || ||||| ||||| |||||| | || |||| Sbjct 50211 CGTTTCTGGTCACAAATTTTTGGTGTAGCATTTTCA--AATAAACGTTGGTTACATTTCT 50268 Query 165919 TTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCG 165978 ||||| | ||||| || || | || | |||| ||| | ||||| | | ||| | | Sbjct 50269 TTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCAATTGGCGTAGTAGGTTTAG 50328 Query 165979 CACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAG 166038 | | || | ||||| ||||||||||| ||||| || ||| | ||||| || ||||| | Sbjct 50329 CTTTAAACTTACGTGCATATGATTTTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTG 50388 Query 166039 AGTTTGAAACGTTCTATACGAAAAA-CATCCTCCTTA-ATGAAGGACTCCGTGCCTGGTT 166096 | || ||||| |||||||| ||||| ||| | ||| ||||||| | || || ||| | Sbjct 50389 AATTCGAAACTTTCTATACAAAAAATCAT--TTATTAGATGAAGGTGTTCGAGCTTGGAT 50446 Query 166097 GGCTCCTGTAGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAAGTCTTGCCAAGAGG 166156 |||| || ||| || |||||||| || || || ||||| || || || || ||| | || Sbjct 50447 GGCTGCTCAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTATTACCACGTGG 50506 Query 166157 CAACGCACTTTAA 166169 ||||| |||||| Sbjct 50507 AAACGCTCTTTAA 50519 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 160906 CGGGGTGTAGCGCAGA--GGTAGCGCGGCTGTTTTGGGAACAGCAGGTCGCAGGTTCGAT 160963 |||| |||||||||| |||||||| ||||||||||||||| ||||||||||||||| Sbjct 35555 CGGGATGTAGCGCAGTTTGGTAGCGCTCCTGTTTTGGGAACAGGAGGTCGCAGGTTCGAA 35496 Query 160964 CCCTGTCACCCCGA 160977 ||||||| ||||| Sbjct 35495 TCCTGTCATCCCGA 35482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557648265801600