Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq429 114 3e-20 seq634 113 1e-19 seq354 87.8 4e-12 >seq429 Length=364352 Score = 114 bits (126), Expect = 3e-20 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAG--GCTTTTCC 151965 || ||||| ||||||||||| ||||| || | || | ||||||||| | ||||| | Sbjct 147008 GTTGACTCCTTTTGGATGTTATAATCCGCCAGGGTGCGCCCATCTTCCAACTGCTTT--C 146951 Query 151966 CGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTT 152025 | ||||| || | |||||||| || | | ||| || || || || ||||| || | Sbjct 146950 CAGCGAAAATCAATCTCTGCTGATCAGGTGGGATCCCCTCTTTATCCTGAATCTTCGACT 146891 Query 152026 TGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAG 152085 ||||| |||| | | || || ||||||||| |||||||||||||| ||||| || | Sbjct 146890 TGACATTCTCAATCGTATCAGATGACTCTACTTCCAGAGTAATAGTTTTTCCCGTCAGGG 146831 Query 152086 TCTTCACGAAGACCTGCAT 152104 | || ||||| | |||||| Sbjct 146830 TTTTAACGAAAATCTGCAT 146812 >seq634 Length=251403 Score = 113 bits (124), Expect = 1e-19 Identities = 155/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | ||| | |||||||| ||||||||||| ||||| ||||| || | |||||| Sbjct 209633 GAGGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAATCTGCTAATGTGCGCCCATC 209574 Query 151952 TTCTA--GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTT 152009 ||| | ||||| || ||||| || | | |||||| || | | ||||| ||||| Sbjct 209573 TTCCAACTGCTTT--CCAGCGAAAATCAAACGCTGCTGATCAGGTGGAATTCCCTCCTTG 209516 Query 152010 TCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATA 152069 || ||||| || |||||| | || | |||| ||| ||| || || || || || Sbjct 209515 TCCTGAATCTTAGACTTGACATTTTCGATAGTGTCAGAAGACTCCACCTCCAGGGTGATG 209456 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| || ||||| |||| ||||| Sbjct 209455 GTCTTCCCTGTGAGTGTTTTCACAAAGATTTGCAT 209421 >seq354 Length=2136 Score = 87.8 bits (96), Expect = 4e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 |||||||| || |||||||||||||| || || || | |||||| || || || || Sbjct 1966 GTAGACTCCTTCTGGATGTTGTAATCTGCCAACGTGCGCCCATCCTCGAGCTGCTTGCCA 2025 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 || ||||| || | |||||| || | | || |||||||| || ||||| || ||| Sbjct 2026 GCAAAGATGAGACGCTGCTGATCAGGGGGAATACCTTCCTTGTCCTGAATCTTCGACTTG 2085 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCC 152078 ||| | || | | || || |||||| ||||| || || || |||||| Sbjct 2086 ACATTTTCAATTGTATCAGACGACTCTACCTCAAGCGTGATGGTCTTGCCC 2136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153807790670480