Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq880 751 0.0 >seq880 Length=74269 Score = 751 bits (832), Expect = 0.0 Identities = 767/996 (77%), Gaps = 6/996 (1%) Strand=Plus/Minus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 || ||| | |||||||| ||| | || ||| | || |||||||||| ||||| | Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| || | |||| ||| | || |||||| |||| || |||||||||| Sbjct 61264 ATGATCCCTACTCTATTAACTGCAACTA-CAGTATTCATCATCGCATTTATCGCTGCTCC 61206 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||| || || ||||| || |||||||| || || ||||||| | | || || ||||| Sbjct 61205 TCCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAA 61146 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 |||||| || ||||| |||||||| |||| ||||| |||||| | || ||||| || || Sbjct 61145 CATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAAT 61086 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 ||||||||| |||||| | ||||||||| | ||||| |||||||||| |||| | ||| | Sbjct 61085 CTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGT 61026 Query 177897 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCG 177956 | || ||| | | ||| | | | | ||||||||||||||||||||| | |||| ||| Sbjct 61025 ATGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 60966 Query 177957 CCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGC 178016 ||||||||||||| |||||| ||| || ||||| || ||||| || ||||| | || Sbjct 60965 TTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGC 60906 Query 178017 TGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTAT 178076 ||||||| | |||| || |||||||||||||||||||||| | |||||| | ||||| Sbjct 60905 TGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTAT 60846 Query 178077 CAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 178136 | || || ||||||| ||||||||| |||||||| |||||||||||| | |||||||| Sbjct 60845 CTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCC 60786 Query 178137 CTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGG 178196 ||||| ||||| || || |||||||| ||||||||||| | ||| || |||||||| Sbjct 60785 ATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGG 60726 Query 178197 TTCTCTGGTTACTTCCTCGCTGGTTCGTGAAACCACCGAGAACGAAAGTCAG--AACTAT 178254 ||| || || ||||| || | | |||||||| || || |||||| |||| ||| | Sbjct 60725 TTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAA--TCAGCTAACGAA 60668 Query 178255 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTC 178314 |||||||| || |||||||||||||| || ||||||||||| ||||||||||||||||| Sbjct 60667 GGTTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTT 60608 Query 178315 GGTCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTC 178374 ||||| | |||||||||||||| || || |||||||| ||||| | ||||||||| | Sbjct 60607 GGTCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTA 60548 Query 178375 GCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTC 178434 || || ||||| || || ||||| |||||||||||| | ||| || || |||||||| Sbjct 60547 GCTGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTT 60488 Query 178435 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAAC 178494 ||| | || ||||||||||||||||| || | | ||| || || || | ||| Sbjct 60487 AACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAAC 60428 Query 178495 ACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAAT 178554 || ||||| || || | ||||||||| | ||||| ||||| ||||| || | ||| Sbjct 60427 ACTTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAAT 60368 Query 178555 GCTCACAACTTCCCTCTTGACCTCGCTGCTGCTGAA 178590 ||||||||||| || ||||| | |||| | |||| Sbjct 60367 GCTCACAACTTTCCACTTGATTTAGCTGTAGTTGAA 60332 Score = 533 bits (590), Expect = 2e-146 Identities = 723/1003 (72%), Gaps = 4/1003 (0%) Strand=Plus/Plus Query 178851 GATGACTGGCTTAAGCGTGATCGGTTCGTTTTTGTTGGTTGGTCAGGTCTTCTTCTGTTC 178910 |||||||||||| |||||||| ||||| ||||| |||||||| ||| | | | || Sbjct 49515 GATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGTTTATTATTATTA 49574 Query 178911 CCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATTCGTCACCTCGTGG 178970 ||| |||||| | ||| | || || ||| | || || | ||||| || || || ||| Sbjct 49575 CCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTTGTTACATCATGG 49634 Query 178971 TATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCTTACTGCTGCTGTA 179030 ||||| || || | |||||||| | | | || || ||||||||| | || ||||| || Sbjct 49635 TATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAATTTCTTAACAGCTGCAGTT 49694 Query 179031 TCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGGTCCAGAAGCTCAG 179090 || || ||||| | | | || ||||| || | | ||||||| |||||||| || Sbjct 49695 TCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGCCCAGAAGCACAA 49754 Query 179091 GGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGT 179150 || || || || ||| ||| | || || ||||| ||||||| || | || ||| Sbjct 49755 GGCGACTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTTGCATTACATGGT 49814 Query 179151 GCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACGTCTAGTCGGTATT 179210 | || ||| | || ||||| ||| | || || ||||| || |||||| ||| ||| Sbjct 49815 TCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGTTCAGTAAAAATT 49874 Query 179211 CGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTC 179270 ||||| || || |||||||| || || | |||||||| || || || || ||||| | Sbjct 49875 CGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCGTATCAGTTTTCTTA 49934 Query 179271 ATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATT 179330 || |||||| | || || || ||||||||||| || ||||| ||||| || || Sbjct 49935 ATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGGTGTTGCCGCAATC 49994 Query 179331 TTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCAACCCGTTCCACATG 179390 ||||| || | || ||| | || || ||||| |||||||| | ||||| ||||| ||| Sbjct 49995 TTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTCCATATG 50054 Query 179391 ATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTCATGGTGCTACAGTA 179450 ||||||||||| ||| | | || | ||| || || ||||| || |||||||| || ||| Sbjct 50055 ATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCCATGGTGCAACTGTA 50114 Query 179451 GAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGGCATTCGAGCCTACA 179510 || |||||| | |||||||| |||| ||||||||||| ||||| | || || Sbjct 50115 GAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCATTTAACCCAACT 50174 Query 179511 CAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGTCTCAGATCTTTGGT 179570 |||| || || || ||||| ||||| ||||| || ||||||||||| || || |||||| Sbjct 50175 CAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGTCACAAATTTTTGGT 50234 Query 179571 ATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTGTTCCTGTCATGGGT 179630 | || || ||||| |||||| |||||||||||||||| ||||| || || | ||| Sbjct 50235 GTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGT 50294 Query 179631 CTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTA-GAGCTTATGACTT 179689 | |||| | ||||| | | ||| | || |||| |||| | || ||||| || Sbjct 50295 TTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGC-TTTAAACTTACGTGCATATGATTT 50353 Query 179690 TGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGTTCTATACCAAGAA 179749 ||| || ||||| || | || || || |||||||| ||||| || |||||||| || || Sbjct 50354 TGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACTTTCTATACAAAAAA 50413 Query 179750 -CATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATCAACCACATGAAA 179808 ||| |||| |||||||| | || ||||||||||| | ||||| || ||||||| Sbjct 50414 TCAT-TTATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAA 50472 Query 179809 ACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 | || ||||| || || || ||||| ||| | || |||||||| Sbjct 50473 AATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTCT 50515 Score = 104 bits (114), Expect = 3e-17 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 18368 AGGGTAGGTGTCCGAGTGGTTAATGGAGGCGGACTGTAAATCCGCTGGCTCTGCCTACGG 18427 ||||| | ||||||||||||||||||||||||| |||||||||| ||||| |||||||| Sbjct 33550 AGGGTCGATGTCCGAGTGGTTAATGGAGGCGGATTGTAAATCCGTTGGCTTTGCCTACGC 33609 Query 18428 GGGTTCAAATCCCTCCCTGCCCATACT 18454 ||||||||||| | | ||||| ||| Sbjct 33610 TGGTTCAAATCCAGCTCGGCCCAAACT 33636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596300640620800