Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq880 708 0.0 >seq880 Length=74269 Score = 708 bits (784), Expect = 0.0 Identities = 748/985 (76%), Gaps = 0/985 (0%) Strand=Plus/Minus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 || ||| | |||||||| |||||| |||||| | || |||||||||| || || | Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| || | | ||||| || ||||||||||| || |||| |||||| Sbjct 61264 ATGATCCCTACTCTATTAACTGCAACTACAGTATTCATCATCGCATTTATCGCTGCTCCT 61205 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || || ||||| || ||||| || || ||| ||||||| | | || ||||||||| Sbjct 61204 CCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAAC 61145 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 |||||||| ||||| ||||| || |||| ||||| || ||| | || ||||| || ||| Sbjct 61144 ATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAATC 61085 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 |||||||| || | | ||||| ||||| |||||||||||||||| |||| | ||||| Sbjct 61084 TGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGTA 61025 Query 169652 TTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGT 169711 | || ||| || | || | | | ||||||||||||||||||||||||| || | ||| Sbjct 61024 TGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCGT 60965 Query 169712 CTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCT 169771 | |||||||| || |||||| |||||||||||| || || ||||| ||||| | ||| Sbjct 60964 TTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGCT 60905 Query 169772 GTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATC 169831 || ||| | | ||||| | || ||||| || |||||||| | |||||| | |||||| Sbjct 60904 GTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTATC 60845 Query 169832 TCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCC 169891 || || || || |||| |||||| || ||||||||||||||||||||| | |||||||| Sbjct 60844 TCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCCA 60785 Query 169892 TTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGT 169951 ||||| ||| | |||||||| || || |||||||| || | || || ||||||||| Sbjct 60784 TTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGT 60725 Query 169952 AGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGT 170011 || || ||||| | |||||||||| || || ||||| || ||| | ||| Sbjct 60724 TCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAGGT 60665 Query 170012 TACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGT 170071 ||||| || |||||||||||||| || ||||||||||| || ||||| |||||||| ||| Sbjct 60664 TACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGGT 60605 Query 170072 CGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCA 170131 || | ||||||||||||||||| || |||||||| |||||| | ||||||||| | || Sbjct 60604 CGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAGCT 60545 Query 170132 GCATGGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAAC 170191 || ||||| || ||||| || |||||||| ||| | ||| | || || ||||| || ||| Sbjct 60544 GCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAAC 60485 Query 170192 CTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACC 170251 | || ||||||||||||||||| || | | ||| || |||||||| ||||||| Sbjct 60484 TTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACACT 60425 Query 170252 TGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCT 170311 ||||| || || | ||||||||| | || || ||||| ||||| || | |||||| Sbjct 60424 TGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATGCT 60365 Query 170312 CACAACTTCCCTCTCGACCTCGCTG 170336 |||||||| || || || | |||| Sbjct 60364 CACAACTTTCCACTTGATTTAGCTG 60340 Score = 509 bits (564), Expect = 2e-139 Identities = 723/1009 (72%), Gaps = 6/1009 (1%) Strand=Plus/Plus Query 170607 GATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTT-TT 170665 |||||||||||| |||||||| || |||||||| || |||||||| || || || || Sbjct 49515 GATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGG-TTTATTATTATT 49573 Query 170666 TCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTTG 170725 || ||||||| | ||| | || |||||| | || || | |||||||||||| || Sbjct 49574 ACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTTGTTACATCATG 49633 Query 170726 GTACACCCACGGACTTGCAAGTTCGTACCTTGAAGGTGCTAATTTCCTTACAGCGGCTGT 170785 ||| || || || | || ||| | | |||||| ||||||| | ||||| || || Sbjct 49634 GTATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAATTTCTTAACAGCTGCAGT 49693 Query 170786 GTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCA 170845 || || ||||| || |||||||||||| | | || | ||||| || || | || Sbjct 49694 TTCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGCCCAGAAGCACA 49753 Query 170846 GGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGG 170905 || || || || |||| ||| | || || | |||| |||||| || | || || Sbjct 49754 AGGCGACTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTTGCATTACATGG 49813 Query 170906 AGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCGTCTCGTAGGGAT 170965 | |||||| | || ||||| ||| | || || ||||| || ||| ||| || Sbjct 49814 TTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGTTCAGTAAAAAT 49873 Query 170966 TAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCT 171025 | | || || || |||||||||||||| | || || || || || || || ||| | Sbjct 49874 TCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCGTATCAGTTTTCTT 49933 Query 171026 CATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAAT 171085 ||||||||| | || || || | |||||||| ||||| ||||| ||||| ||||| Sbjct 49934 AATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGGTGTTGCCGCAAT 49993 Query 171086 CTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATAT 171145 |||||| || | || ||| | ||||||||||| |||||||| | || ||||| ||||| Sbjct 49994 CTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTCCATAT 50053 Query 171146 GATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTACAGT 171205 ||||||||| || ||| | | || | || || || | ||| || ||||||| || || Sbjct 50054 GATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCCATGGTGCAACTGT 50113 Query 171206 AGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACACGAC 171265 ||| || || || | ||||||||||||| ||||| || || |||||| || | || Sbjct 50114 AGAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCATTTAACCCAAC 50173 Query 171266 TCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTTTGG 171325 ||| | ||||| |||||||| ||||| ||||| |||||||||||||| || |||||||| Sbjct 50174 TCAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGTCACAAATTTTTGG 50233 Query 171326 TATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCATGGG 171385 | | || || ||||| |||||||| |||||||||||| | ||||| || || | || Sbjct 50234 TGTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGG 50293 Query 171386 TCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTA-GGGCTTATGATT 171444 | | ||| | ||| | || | | ||| | ||| |||| |||| | || ||||||| Sbjct 50294 TTTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGCT-TTAAACTTACGTGCATATGATT 50352 Query 171445 TCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAAGA 171504 | ||| ||| || | | || || |||||||| || ||||| || |||||||| || | Sbjct 50353 TTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACTTTCTATACAAAAA 50412 Query 171505 A-CATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGAA 171563 | ||| |||| |||||||| |||| || |||||||| | ||| || || |||||| Sbjct 50413 ATCAT-TTATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGATCAGCCTCATGAA 50471 Query 171564 AACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 || || || ||||||||||| || |||| ||||| || || |||| || Sbjct 50472 AAATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTCTTTAAT 50520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592191885817600