Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq661 212 1e-49 seq429 122 2e-22 seq634 118 2e-21 seq354 111 3e-19 seq556 98.7 2e-15 seq232 98.7 2e-15 seq227 91.5 3e-13 seq207 87.8 4e-12 >seq661 Length=126702 Score = 212 bits (234), Expect = 1e-49 Identities = 1107/1745 (63%), Gaps = 54/1745 (3%) Strand=Plus/Minus Query 315490 TTAACTTTGATCGTGTTTCCCAGAGCATCGGTGTACTCGGTTTCTT--TCTTGAGCTCCA 315547 |||| ||||| |||||||| || ||||| ||| ||| || || |||| ||| | Sbjct 92713 TTAATCTTGATGGTGTTTCCAAGGGCATCAGTGGTCTC--TTCCTGCCTCTTCCACTCGA 92656 Query 315548 TTTTGATAGCGTCGACTACCGCGGCGGATTGTCCGGTGATTTGGACGACACCTCCGCCAA 315607 ||| |||| ||| | | ||||| || || |||||||| | || ||||| |||| Sbjct 92655 GCTTGGCAGCGGCGAGTGCAGCGGCAGACTGACCGGTGATCTCGAGCTTTCCTCCTCCAA 92596 Query 315608 CGGCCCAGTTTTCGACACACACGTTTTTAACAAATTCGCCACTGTGACTAATCACCACCA 315667 | | ||| | || | || ||| | | | || || |||| || || || | Sbjct 92595 CAGTCCATGTCTCACCGCATACGGTGTCCAAGAACTCTTGGGAGTGAGAAACAACGACAA 92536 Query 315668 CCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGAGACTCTCGCGGTCCACAA 315727 | || || ||||| | ||| || || | | |||||||||||| || || || | Sbjct 92535 CACCTCCACCGAACTCCTTGAGAGCGGCAGACATGGCACCGAGGGATTCACGATCAAGGT 92476 Query 315728 AGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCCATAGAGCGGCGCCGATAA 315787 |||| || |||||||| || ||||||| || || |||||||| | || || |||| | Sbjct 92475 AGTTTGTAGGCTCATCCAGGACGATGATATGTGGCTGTTGCCACATGGCAGCTCCGAGCA 92416 Query 315788 CGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCGAGAATGAGTGGTAAATTCTG 315847 | ||||| | || || || || || || ||||||||| |||| || || | || || | Sbjct 92415 CAAGCTTGACCTTCTGACCTCCGGAAAGACCACGGATGTGAGAGTGTGTTGCGAACTCAG 92356 Query 315848 GGTCAAGGCCAACATTAGCCA-TATGTTCTTCCACGTTCTTCGCGGTCAGTGGTTTA--- 315903 || || || | || | | || ||| || ||||| || |||| ||||||| Sbjct 92355 ACTCGAGTCCGAGATCGCCGAGCATTTTC-TCAACGTTGGCAGCAGTCAATGGTTTACCC 92297 Query 315904 AACATACCGTTTGCAACGGCTTCTTTGGTGTCAATGTCGTTCAGGATCTT-ACCAAACCC 315962 | ||||||| || | || ||| ||| ||||| ||||| | ||||| | ||||| Sbjct 92296 ATCATACCGGCCGCGGCAGCCTCTCTGGCATCAATCTCGTTAACCATCTTCTCGTAACCC 92237 Query 315963 ATACTCCTCGAGACGTTCGCGGGACATCCA------CTGGGTAGTCTCGTCGTTTTTCCA 316016 || ||| ||||| | | |||| || ||| ||| || | | || | ||| Sbjct 92236 AT-CTCTTCGAGCTGAGCACGGGTCAACCAAGAGGTCTGTCCAGCTGGGGCATTCTGCCA 92178 Query 316017 CTGAACTTCATACTCATACGACTTCTTGAGTTTGCGTCGCCCAAGGATCTTGTCAAGGAT 316076 || ||| || ||||| || |||||| || || || || || | ||| |||| Sbjct 92177 CTCAACCTCGTACTCGTAACCCTTCTTCAGCTTACGGCGGTTGAGAAGCTTCTCAACAGA 92118 Query 316077 TTTCTTCACAC------CGTCAACAACTTTCGTTTCATACATCTTCTTCAGTTCTTCGTC 316130 ||| |||| || | || ||| ||| | | ||| | ||||| || Sbjct 92117 GCGCTTGACACCCTGTTCGGTGGCCACCTTCTGTTCCTTGAGCTTGGCC---TCTTCTTC 92061 Query 316131 ATTTGTCTTCCTAGAAACGACGTCAAGTGATTCTTTGTCTTCACCGGAAGCATAACGCCA 316190 | ||| | | ||| | | | |||| |||| || |||| ||| |||||||| Sbjct 92060 CTCGGTCAAACGATCAACCTTGCTCTGGGCTTCTCTGTCCTCTCCGGTAGCGTAACGCCA 92001 Query 316191 TTGGATGTACTGATTGGGCGTCATGTCAAGATGATCCTCGATGTGGTGGAAAGCGTGCTG 316250 || |||||||| || || ||| | || | |||| ||| || || |||||||||||||| Sbjct 92000 CTGAATGTACTGGTTTGGAGTCTTATCCAAATGACTCTCAATATGATGGAAAGCGTGCTG 91941 Query 316251 TGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACGCTACCGTTAGTAGTTTCCAT 316310 || || || || | ||||| || || |||||||| || || | | | | |||| Sbjct 91940 GGCAACATATGCTACACGCAAGTTAGGGTGCTTCCACACAAATCCATCATTTGGCTCCAA 91881 Query 316311 CTGCCCTGTTAGCACTTTAATGAGAGTACTTTTTCCCGCGCCGTTTTCACCCACGACA-C 316369 || || || || | ||| || | ||| || || || |||||| || || ||| Sbjct 91880 CTCTCCAGTGAGAAGTTTGATCATGGTAGACTTACCAGCTCCGTTTGGTCCAAC-ACAGG 91822 Query 316370 CGATCCTGGAGTTGAGCGATACCTGGGCATTCACGTTGTCGAAGACCAGTTTGTCCGTCC 316429 | | | ||||||||| || |||||| | |||| | || | | ||||| || | Sbjct 91821 CAACACGGGAGTTGAGAGACACCTGGAGTGTGACGTCATTGAGAATCTTCTTGTCAGTTC 91762 Query 316430 CAGGATACTTGAAACCCACCCCGCGAAGCTTCATGATGGCACGGTCCTTCGAAGTGATAC 316489 | ||||| || ||| || | | ||| | ||| || | |||||| || | || | Sbjct 91761 CTGGATAACCAAAGTGCACTCCTCTCATCTTGAGGATAGCTCTGTCCTTGGAGTTAATGC 91702 Query 316490 CCTCGAGAAAGCCGGGTTCGGGGAATTTCCACGTAGTCTTCGTCTCGGCGAGCGTGTAGT 316549 |||| || || || || || || | |||| | |||| | || | | |||||| Sbjct 91701 CCTCAAGGAATCCTGGCTCTGGAAGGACCCACTTGGTCTGAGCATCCTCCAAATTGTAGT 91642 Query 316550 A--ACTTGCAGATTCGGGACGCTTCTTCACGAATTCGGACAGATTTCCTTTATACTTCTT 316607 | ||||| | || || | | ||| || | ||| | || ||||| ||||| Sbjct 91641 AGGACTTG--GCCTCTGGTCTGTGCTTGACAAGTTCAGCCAAGTTTCCACGGTACTT--- 91587 Query 316608 CAGCTTCAGGTTGGGT---TCGTAATGGATGATAGAAGTACAGACAGCATCGAGGAAACC 316664 || | ||| || || ||||| || ||| ||| || || || | ||| || Sbjct 91586 --GC-GGATCTTGCGTCCCTCATAATGAATAATACCAGTGCACACCTTGTCCAAGAATCC 91530 Query 316665 AGAATCGTGTGATACAATCACACATGAAACGCCTTTTAGGTTGACCAGATAGTCGATCAG 316724 ||| ||||| || ||||| ||| ||| ||| | | ||| || ||||| | || Sbjct 91529 AGAGTCGTGCGACACAATGACAGATGTCACGTCCGTCAGGGATGTGAGGTAGTCAACCAA 91470 Query 316725 CCAGCTCACATTCGACACAGAAAGATGGTTGGTCGGTTCGTCAAGTAGTAGTAGCTTCGC 316784 ||| || || | || ||||||||| || || || || | | | | | || Sbjct 91469 CCACTGAACGTTGGTAACGTCAAGATGGTTTGTAGGCTCATCCAACAACATAATATCAGC 91410 Query 316785 GTCCAACAGCATAGCGCGTGCGAGAGCAAGCTTCATTTTCCACCCCCCGGAAAGAGTGTT 316844 | || || |||||| || || | |||||||||||| ||||| || || || |||| Sbjct 91409 CTTCATCAACATAGCACGGGCCAAAGCAAGCTTCATCTTCCATCCTCCAGAGAGAGCAGC 91350 Query 316845 AATCGGGGCAGATTGGCGCTCAACATCAAAGCCAACTGATTCGAGAGTAGACACGATTTT 316904 | | || || || | || ||||| || | || || | || || Sbjct 91349 CACAGCTCCATTCTGCATATCCTCGGAGAAACCAACGGAAGTCAAAGCAGTCTGGACTTC 91290 Query 316905 TTC--ACGAGACCATGTGTT--TTCTTTAACTTGGTCGTCATTGGCAATGAAGTCAACGA 316960 ||| | |||| | | | | || | || ||||||| ||||||||||||| Sbjct 91289 TTCCTTGGTGACCTTCTCATACTGAGCCAAAGT-CTCATCATTGGTGATGAAGTCAACGA 91231 Query 316961 TAGACGTGTTAGATTCGGATCCGTCGAGGTCATGCTCAACATATGCAGTTTTCAGAATAT 317020 | || | || ||||| | |||| ||| ||||||||||| |||| || | Sbjct 91230 CTGCAGTCTCAGCCTCGGAGGCATCGATGTCGTGCTCAACATACACAGTGCGGAGCTCTT 91171 Query 317021 CCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGC 317080 |||| | ||||| || || | ||| || || |||| || ||||||| ||| ||||| | Sbjct 91170 CCTTTGGTGGGAATCCATCGACCTGTCCATTGGCAATGGCTCTCATCAATGTGGACTTTC 91111 Query 317081 CAGCA-CCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGT- 317138 | ||| || || || || || |||||||| || | ||| ||||| | || |||| Sbjct 91110 C-GCATCCGTTTGGTCCACAGAGACCATAACGCTGTCCACGCTTCAAGTGAA---GGGTA 91055 Query 317139 --GTTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCC 317196 || ||| ||| | ||| ||||||| || || ||||| || || | || || ||| Sbjct 91054 GCATTCATCAAAAGCACCTTGGCACCATAAGCAAGGGAGAATTCGCAGTTGCAAAGATCC 90995 Query 317197 TCGCC 317201 || || Sbjct 90994 TCACC 90990 >seq429 Length=364352 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||| |||||| |||| |||||||| || ||||||||||| || || || Sbjct 147038 CCCCCTCGCAAGCGAAGAACCAAGTGTAACGTTGACTCCTTTTGGATGTTATAATCCGCC 146979 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||||| ||||| || | || || || || || ||||| | || || ||| || Sbjct 146978 AGGGTGCGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAATCTCTGCTGATCAGGTGGG 146919 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| || || || ||||| | || || | || || || || || | || ||| Sbjct 146918 ATCCCCTCTTTATCCTGAATCTTCGACTTGACATTCTCAATCGTATCAGATGACTCTACT 146859 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || ||||| || || || ||||||| || |||||||| |||||||| Sbjct 146858 TCCAGAGTAATAGTTTTTCCCGTCAGGGTTTTAACGAAAATCTGCAT 146812 >seq634 Length=251403 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 282885 CGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCA 282944 || || |||| ||| || || || ||||||||||| || || || | ||||| ||| Sbjct 209635 CGGAGGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAATCTGCTAATGTGCGCCCA 209576 Query 282945 TCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTG 283004 || || | || || || || || |||||||| || || ||| ||||| ||||||||| Sbjct 209575 TCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGCTGATCAGGTGGAATTCCCTCCTTG 209516 Query 283005 TCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATC 283064 || || ||||| | || || | ||||||||||| |||| || || || || ||||| Sbjct 209515 TCCTGAATCTTAGACTTGACATTTTCGATAGTGTCAGAAGACTCCACCTCCAGGGTGATG 209456 Query 283065 GTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| || || | || || || || || ||||| Sbjct 209455 GTCTTCCCTGTGAGTGTTTTCACAAAGATTTGCAT 209421 >seq354 Length=2136 Score = 111 bits (122), Expect = 3e-19 Identities = 145/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || | || |||||| |||| || || || || || ||||||||||| || || Sbjct 1936 CCTCCTCTCAAGCGAAGCACCAAGTGCAATGTAGACTCCTTCTGGATGTTGTAATCTGCC 1995 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | |||||| |||||||| || || || || |||||||| | ||| || || ||| ||| Sbjct 1996 AACGTGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCAGGGGGA 2055 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| |||||||| || ||||| | || || | || || || || || | || || Sbjct 2056 ATACCTTCCTTGTCCTGAATCTTCGACTTGACATTTTCAATTGTATCAGACGACTCTACC 2115 Query 283053 TCGAGAGTGATCGTCTTACCC 283073 || || ||||| ||||| ||| Sbjct 2116 TCAAGCGTGATGGTCTTGCCC 2136 >seq556 Length=75407 Score = 98.7 bits (108), Expect = 2e-15 Identities = 256/383 (67%), Gaps = 12/383 (3%) Strand=Plus/Minus Query 274410 TCCTTTCCCTTCTTGGCTACCACGATGGGCGTGATAAATTTCTTCAGGAAACCTGGAATT 274469 ||||| ||||| | || | ||| || ||||| |||| | || || ||||||||| Sbjct 29994 TCCTTGCCCTTTGTAGCCTTGATGATTGGAGTGATGAATTCGATAAGAAAGCCTGGAATT 29935 Query 274470 TCTAGCAGACTGGGGAAACAACTA-TGGAAAAAGTTCATGACAAGACCTGATATGTGAGT 274528 | |||||| || | | || | || || || ||||||| ||| || ||||||| Sbjct 29934 TTCAGCAGAGATGG-ATAGAAGTGGTGCAAGAAATTCATGATAAGTCCCTTAATGTGAGA 29876 Query 274529 TCCGTCAACGTCGGCATCTGTCATGATCATAACATGTCCATACCGAAGCGAGGAAGTATC 274588 ||| || || ||| ||||||||||| | || ||||| || || || ||| Sbjct 29875 TCCATCGTGATCCTGATCCGTCATGATCATCAAGTGCCCATATCGCAGGGACTTGACATC 29816 Query 274589 TTTATACAACTTCCCTGTTTGAAGCCCAAGAATTTGCTTGAGAGCGGTGATTTCTTCGTT 274648 | ||| | ||| || || ||||| | ||| ||||||| | | |||||||| |||| Sbjct 29815 CTCATAGACCTTTCCATGCTGGAGCCCCAAAATCTGCTTGATATTGTTGATTTCTGCGTT 29756 Query 274649 CTTTGTGAT---ACTCGCCACAGAAGCATCACGTACGTTCAGCAACTTACCGCGGAGAGG 274705 ||||| ||| | ||| | ||||| || || |||||||| || || || || || Sbjct 29755 GCCAGTGATTTGACTAG-CACTG--GCATCTCGAACATTCAGCAATTTTCCTCGAAGTGG 29699 Query 274706 GAAAACGCCATACCTTTCGCGCCCGATGACCGAAAGACCGGCGATCGCGA--GAGTTGCT 274763 ||| || || || | || | || | || || | ||| ||| || | || || | Sbjct 29698 GAAGACTCCGTATCGATCTCTTCCAACAACTGACAAACCACTGATGGCCAATGACTT--T 29641 Query 274764 GCTGAATCTCCCTCTGTGAGAAT 274786 || |||||||||||||| || || Sbjct 29640 GCAGAATCTCCCTCTGTCAGGAT 29618 >seq232 Length=44964 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 230187 GAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTC 230246 || |||||||| ||||||||||| | ||| | || ||||||||||| || ||| Sbjct 11839 GAGAAGGAGTTTATTTGCGACGCCCTGCCTGTCGACCTGATCGGCATGAACGCGAGGCTC 11898 Query 230247 ATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAA 230306 ||| || || || ||||| ||||||||| | || | || || || ||| | || || Sbjct 11899 ATGTCACAGTACATTGAATTTGTAGCTGATAGACTTCTGGTTGCCCTGGGGAATGACAAG 11958 Query 230307 GTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACT 230366 ||||| || || || |||| || ||||| || ||||| | ||||| || || Sbjct 11959 GTGTACAATGTTGCCAATCCATTCGATTGGATGGAACTGATTTCTTTGCAGGGAAAGACA 12018 Query 230367 AACTTCTTCGAAAAGCGTGTCAGCGATTATCAAA 230400 || |||||||| ||| | || |||| || |||| Sbjct 12019 AATTTCTTCGAGAAGAGAGTTGGCGAGTACCAAA 12052 >seq227 Length=8124 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 168749 CGAATTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCC 168808 |||||||||||| |||||||||| |||||||||||||||||||| | |||||| |||||| Sbjct 8049 CGAATTAGTATAATGGTTAGTATTCCTGCCTGTCACGCAGGAGATCTGGGTTCGATTCCC 7990 Query 168809 CGATTCGTCG 168818 | |||| || Sbjct 7989 TGGTTCGGCG 7980 >seq207 Length=84208 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/67 (90%), Gaps = 2/67 (3%) Strand=Plus/Minus Query 167292 CCATAGCTCAGTT--GGTTAGAGCGTTCGACTGTTAATCGAGAGGTCGTCGGTTCGAACC 167349 ||||||||||||| |||||||||| ||||||||||||||||||||| ||||||| | || Sbjct 84093 CCATAGCTCAGTTTCGGTTAGAGCGCTCGACTGTTAATCGAGAGGTCATCGGTTCAAGCC 84034 Query 167350 CGACTGG 167356 ||| ||| Sbjct 84033 CGATTGG 84027 Score = 87.8 bits (96), Expect = 4e-12 Identities = 60/67 (90%), Gaps = 2/67 (3%) Strand=Plus/Minus Query 167121 CCATAGCTCAGTT--GGTTAGAGCGTTCGACTGTTAATCGAGAGGTCGTCGGTTCGAACC 167178 ||||||||||||| |||||||||| ||||||||||||||||||||| ||||||| | || Sbjct 84093 CCATAGCTCAGTTTCGGTTAGAGCGCTCGACTGTTAATCGAGAGGTCATCGGTTCAAGCC 84034 Query 167179 CGACTGG 167185 ||| ||| Sbjct 84033 CGATTGG 84027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046727398015520