Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq232 149 7e-31 >seq232 Length=44964 Score = 149 bits (164), Expect = 7e-31 Identities = 396/597 (66%), Gaps = 15/597 (3%) Strand=Plus/Minus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 ||||||||||| || || || ||||| | | ||||| || || || ||||| ||| Sbjct 11762 CATGCAAAATCTGTGTGGAGCCCCTCATCACGAGAGATCAACTCGTTGGAGAATGTCAAT 11703 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAA 23628 ||||| | | ||||| ||||| | ||| | || ||| || |||||||| |||||| Sbjct 11702 CCTGGAAGCAGCCCTCGCTTTTTGAGCCAGTAAATGGCACAGAAGGATCCGGAGAAGAAA 11643 Query 23629 ATACCCTCAACAGCCGCAAAGGCCACAAGACG-TGTACCAAATGTTGCATTATAATCAGA 23687 || || ||||| || || || || | || | | | ||| | | | | ||| Sbjct 11642 ATTCCTTCAACGCAGGCGAATGCAACCAATCGCTCTGCGAAAGAAT-CGCTGGACTCA-- 11586 Query 23688 AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCA-ATTGTTTCAATTGCTT 23746 |||||| | | | ||||| |||||| || || |||| | ||| || || || | Sbjct 11585 -ATCCATCTCATGGCCCAATCTGCCTTCTTCTTCAC-CACTGGTACTGTCTCGATGGCAT 11528 Query 23747 TTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACA 23806 || || | ||||| || ||| | || ||||| |||| || | |||||||| Sbjct 11527 GGAACAGCTTGTTCTTTTCAACAGGATCCTTGATGTATGTCTCAAGCAGGAGACTATACA 11468 Query 23807 TTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACA 23866 | || ||||||||| ||||| || || || || ||||||||| ||| || || | | Sbjct 11467 TCTCGCTATGAATATTCTCAATGGCGATTTGGAATCCATAAAAAGCTCTGGCCTCTGGGA 11408 Query 23867 ATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAG 23926 || || || || ||||||| | | ||||| || || || || |||||| |||| Sbjct 11407 TCTGCACCTCCTTCAAAAATCGTACCCCCAAATTCTCATTTACGATGCCATCAGATGCAG 11348 Query 23927 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTG--AT--AATTTTTTC 23982 ||||||| ||||| |||| || |||||||| || |||| || ||| || | Sbjct 11347 CAAAGAATGCAAGCACATGAGAGATGAAATGTCTCTC----GTTGTCATTCAATCCTTCC 11292 Query 23983 CAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCA 24042 || | || || ||| | | |||||| || ||| ||||||| || ||| || Sbjct 11291 CAGTGCTTGATGTCTCCTCCCAGATCAACCTCTTCAGCTGTCCAGAAGGAAGCCTCTGCC 11232 Query 24043 CGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATATTACGAATCTATCA 24099 ||| |||||| ||| || ||||||| | || || || | ||||||| |||| Sbjct 11231 TTCTTGTACATTTCCCAGATTTCATTATACTTGATCGGGAACAAGACGAATCGATCA 11175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521482263632000