Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq634 131 1e-25 seq429 114 9e-21 seq354 109 4e-19 seq221 87.8 1e-12 >seq634 Length=251403 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 44108 ATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCG 44167 ||||| ||||||| | | |||| || | || ||||||||||||||| ||||| Sbjct 209650 ATTCCTCCTCTCAAACGGAGGACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAATCT 209591 Query 44168 GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAA 44227 || | | |||| | || |||| |||||| || || || ||||||||||||||||| | Sbjct 209590 GCTAATGTGCGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAAACGCTGCTGATCAGGT 209531 Query 44228 GGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCC 44287 || | || ||||| ||| ||||| ||| | || | || ||||| | || ||| Sbjct 209530 GGAATTCCCTCCTTGTCCTGAATCTTAGACTTGACATTTTCGATAGTGTCAGAAGACTCC 209471 Query 44288 ACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||| || || ||||| || ||||| || ||||| ||||||||||| Sbjct 209470 ACCTCCAGGGTGATGGTCTTCCCTGTGAGTGTTTTCACAAAGATTTGCAT 209421 >seq429 Length=364352 Score = 114 bits (126), Expect = 9e-21 Identities = 171/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 44106 TCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAAT 44165 |||| ||||||| || | | |||| ||| | ||| ||||||||||||||| |||| Sbjct 147043 TCATCCCCCCTCGCAAGCGAAGAACCAAGTGTAACGTTGACTCCTTTTGGATGTTATAAT 146984 Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 | || || |||| | || |||| |||||| || || || ||||| | ||||||||| | Sbjct 146983 CCGCCAGGGTGCGCCCATCTTCCAACTGCTTTCCAGCGAAAATCAATCTCTGCTGATCAG 146924 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 || | || || || ||| |||||| ||| | | | || || || | || | Sbjct 146923 GTGGGATCCCCTCTTTATCCTGAATCTTCGACTTGACATTCTCAATCGTATCAGATGACT 146864 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATGTGAA 44345 | || |||| ||||| || |||||||| ||||| || ||||| || ||||| || ||| Sbjct 146863 CTACTTCCAGAGTAATAGTTTTTCCCGTCAGGGTTTTAACGAAAATCTGCATCGTGAGAA 146804 Query 44346 TGA 44348 || Sbjct 146803 AGA 146801 >seq354 Length=2136 Score = 109 bits (120), Expect = 4e-19 Identities = 149/207 (72%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 44105 TTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAA 44164 ||||| || ||||||| | | ||||| ||| | || |||||| |||||||||||| Sbjct 1931 TTCAT-CCTCCTCTCAAGCGAAGCACCAAGTGCAATGTAGACTCCTTCTGGATGTTGTAA 1989 Query 44165 TCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 || || | |||| | || || |||||||| || |||||||| | |||||||||||| Sbjct 1990 TCTGCCAACGTGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGATCA 2049 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | ||||||||| ||| |||||| ||| | || | || || || | || Sbjct 2050 GGGGGAATACCTTCCTTGTCCTGAATCTTCGACTTGACATTTTCAATTGTATCAGACGAC 2109 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCC 44311 || ||||| | ||| || ||||| ||| Sbjct 2110 TCTACCTCAAGCGTGATGGTCTTGCCC 2136 >seq221 Length=83180 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || || |||||| || || |||||||| || | | ||| | || || Sbjct 43867 CACCAAGTGCAGTGTAGACTCCTTCTGAATATTGTAATCTGCCAATGTACGCCCATCCTC 43926 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 ||||||||||| || ||||||| | ||||||||| | || | || ||||| ||| Sbjct 43927 AAGCTGCTTCCCAGCGAAGATCAGTCTCTGCTGATCAGGCGGGATCCCCTCCTTATCCTG 43986 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 || ||| ||| | | | || || || | || || ||||| | || || ||||| Sbjct 43987 AATTTTCGACTTGACATTCTCAATCGTATCTGAAGACTCGACCTCGAGGGTTATGGTCTT 44046 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 || || || || || ||||| || |||||| Sbjct 44047 CCCAGTCAGTGTTTTGACGAAAATCTGCATG 44077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359986539102960