Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq634 150 4e-31 seq429 134 3e-26 seq221 123 6e-23 seq354 102 2e-16 >seq634 Length=251403 Score = 150 bits (166), Expect = 4e-31 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || |||||||| |||||||| || || |||||||| |||||||| || ||| Sbjct 209424 CAAATCTTTGTGAAAACACTCACAGGGAAGACCATCACCCTGGAGGTGGAGTCTTCTGAC 209483 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| || ||||| || || || ||||| Sbjct 209484 ACTATCGAAAATGTCAAGTCTAAGATTCAGGACAAGGAGGGAATTCCACCTGATCAGCAG 209543 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| ||||| ||| | |||||||| | || | || ||||||||| || Sbjct 209544 CGTTTGATTTTCGCTGGAAAGCAGTTGGAAGATGGGCGCACATTAGCAGATTATAACATC 209603 Query 178104 CAAAAAGAATCAACACTGCAT 178124 ||||| || || || ||||| Sbjct 209604 CAAAAGGAGTCTACCTTGCAT 209624 >seq429 Length=364352 Score = 134 bits (148), Expect = 3e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| || || |||||||| || || || || || || || || Sbjct 146815 CAGATTTTCGTTAAAACCCTGACGGGAAAAACTATTACTCTGGAAGTAGAGTCATCTGAT 146874 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| ||||| ||||||||||| ||||| || ||||| || || ||||| Sbjct 146875 ACGATTGAGAATGTCAAGTCGAAGATTCAGGATAAAGAGGGGATCCCACCTGATCAGCAG 146934 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || ||||| ||||| ||| | |||||||| | || || || ||||||||| || Sbjct 146935 AGATTGATTTTCGCTGGAAAGCAGTTGGAAGATGGGCGCACCCTGGCGGATTATAACATC 146994 Query 178104 CAAAAAGAATCAAC 178117 ||||| || ||||| Sbjct 146995 CAAAAGGAGTCAAC 147008 >seq221 Length=83180 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| ||||| || || || || || || ||||||||||| || ||||| Sbjct 44073 CAGATTTTCGTCAAAACACTGACTGGGAAGACCATAACCCTCGAGGTCGAGTCTTCAGAT 44014 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| ||||| || |||||||| || || || ||||| || || ||||| Sbjct 44013 ACGATTGAGAATGTCAAGTCGAAAATTCAGGATAAGGAGGGGATCCCGCCTGATCAGCAG 43954 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||| |||||||| || || ||||| || ||||| | || | || ||||| || | Sbjct 43953 AGACTGATCTTCGCTGGGAAGCAGCTTGAGGATGGGCGTACATTGGCAGATTACAATATT 43894 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || |||||||| |||| Sbjct 43893 CAGAAGGAGTCTACACTGCA-CTTG 43870 >seq354 Length=2136 Score = 102 bits (112), Expect = 2e-16 Identities = 132/181 (73%), Gaps = 1/181 (1%) Strand=Plus/Minus Query 177948 GGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAG 178007 || || || ||||| || ||||| || || || || || || || ||||| ||| Sbjct 2135 GGCAAGACCATCACGCTTGAGGTAGAGTCGTCTGATACAATTGAAAATGTCAAGTCGAAG 2076 Query 178008 ATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAG 178067 ||||||||||| ||||| || || || || ||||| || || ||||| || || || ||| Sbjct 2075 ATTCAGGACAAGGAAGGTATTCCCCCTGATCAGCAGCGTCTCATCTTTGCTGGCAAGCAG 2016 Query 178068 CTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTT 178127 ||||| ||||| | || | || ||||| ||| |||| || || || ||| |||| ||| Sbjct 2015 CTCGAGGATGGGCGCACGTTGGCAGATTACAACATCCAGAAGGAGTCTACATTGCA-CTT 1957 Query 178128 G 178128 | Sbjct 1956 G 1956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203717627930720