Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq221 91.5 1e-13 seq634 82.4 7e-11 >seq221 Length=83180 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||||| ||||| || |||||||||||| || || || | | || ||| | || || Sbjct 43867 CACCAAGTGCAGTGTAGACTCCTTCTGAATATTGTAATCTGCCAATGTACGCCCATCCTC 43926 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTCCA 41771 |||||||| || ||||| ||||| | ||| || || |||||| | | |||||| ||| Sbjct 43927 AAGCTGCTTCCCAGCGAAGATCAGTCTCTGCTGATCAGGCGGGATC-CCCTCCTTATCC- 43984 Query 41772 TGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| |||| | ||| | | | || || ||||| ||||| | ||||| || Sbjct 43985 TGAATTTTCGACTTGACATTCTCAATCGTATCTGAAGACTCGACCTCGAGGGTTATGGTC 44044 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || ||||| || || ||||||||||||||| Sbjct 44045 TTCCCAGTCAGTGTTTTGACGAAAATCTGCATG 44077 >seq634 Length=251403 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 |||| ||||| || |||||| || |||||||| || | | |||||| | || || Sbjct 209629 ACCAAATGCAAGGTAGACTCCTTTTGGATGTTATAATCTGCTAATGTGCGCCCATCTTCC 209570 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 | |||||| || ||||| |||| ||||| || || | |||| | |||||||||| || Sbjct 209569 AACTGCTTTCCAGCGAAAATCAAACGCTGCTGATCAGGTGGAATTCCCTCCTTGTCC-TG 209511 Query 41774 ATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 | | || | ||| || ||| | ||||| ||||||||||||| || || || Sbjct 209510 AATCTTAGACTTGACATTTTCGATA--GTGTCAGAAGACTCCACCTCCAGGGTGATGGTC 209453 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || || || || ||||| Sbjct 209452 TTCCCTGTGAGTGTTTTCACAAAGATTTGCAT 209421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462298914656000