Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq286 95.1 3e-14 seq797 86.0 1e-11 seq669 86.0 1e-11 seq306 86.0 1e-11 seq214 86.0 1e-11 seq186 86.0 1e-11 seq81 86.0 1e-11 seq14 86.0 1e-11 >seq286 Length=93241 Score = 95.1 bits (104), Expect = 3e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 319819 TCGTGTTCCACGTAAGCAGTTTTCAAAACATCCGCAGAGGGGAACCCTTCAAGCTGGCCG 319878 ||||| |||||||| | || || | || || | ||||| || || | ||||||| Sbjct 27420 TCGTGCTCCACGTACACGGTGCGCAGCTCGTCAGCCGGAGGGAAGCCGTCCACCTGGCCG 27479 Query 319879 TTCACAATAGCGCGCATCAGGGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAG 319938 || | || || | |||||| || || || ||| | ||||| || || ||||| |||||| Sbjct 27480 TTGGCGATGGCCCTCATCAGCGTGGACTTGCCCACGCCGTTGGGGCCGCACAGGCCGTAG 27539 Query 319939 CGGTTTCCGCGTTTCAGGTTGAACCGCGTGTTGTTCAGAAGAATTTTTCCACCATATGCC 319998 ||||| ||||| | ||| | | ||||||||| || || || ||||||| || Sbjct 27540 CGGTTGCCGCGGATGAGGCGCATGGTGGCGTTGTTCAGCAGGATCTTGGCACCATAGGCG 27599 Query 319999 AGAGAAAATTCACAATCACACAGATCCTCACC 320030 || || || || || | ||||| ||||| || Sbjct 27600 AGCGAGAACTCGCAGTTGCACAGCTCCTCGCC 27631 Score = 93.3 bits (102), Expect = 9e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 319021 TGGATATACTGGTTGGGTGTCATGTCAAGATGATCCTCGATGTGGTGGAAAGCATGCTGT 319080 ||||| |||| |||||| ||| |||| || || | |||||||||||| ||||| |||||| Sbjct 25713 TGGATGTACTCGTTGGGGGTCTTGTCCAGGTGCTGCTCGATGTGGTGAAAAGCGTGCTGT 25772 Query 319081 GCCACGTAAGCAAGACGCATATTTGGATGCTTCCAAACACTACCGATGGTGGCTTCCATT 319140 |||||||| || | |||| || || |||||||| || | || ||||| || | Sbjct 25773 GCCACGTAGGCGATGCGCAGGTTGGGGTGCTTCCACACGGTGCCCTCAGTGGCCTCGGTC 25832 Query 319141 TGTCCCGTGAGCACCT 319156 | || || ||||||| Sbjct 25833 TCGCCGGTCAGCACCT 25848 >seq797 Length=1202 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 294 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 353 Query 165770 CCCAC 165774 ||||| Sbjct 354 CCCAC 358 >seq669 Length=397894 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 391085 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 391026 Query 165770 CCCAC 165774 ||||| Sbjct 391025 CCCAC 391021 >seq306 Length=73690 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 19297 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 19238 Query 165770 CCCAC 165774 ||||| Sbjct 19237 CCCAC 19233 >seq214 Length=54951 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 34590 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 34649 Query 165770 CCCAC 165774 ||||| Sbjct 34650 CCCAC 34654 >seq186 Length=14196 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 1005 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 946 Query 165770 CCCAC 165774 ||||| Sbjct 945 CCCAC 941 >seq81 Length=305366 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 61447 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 61388 Query 165770 CCCAC 165774 ||||| Sbjct 61387 CCCAC 61383 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 65040 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 65099 Query 165770 CCCAC 165774 ||||| Sbjct 65100 CCCAC 65104 >seq14 Length=24219 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 930 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 871 Query 165770 CCCAC 165774 ||||| Sbjct 870 CCCAC 866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057805458989840