Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq787 156 4e-33 seq723 123 3e-23 seq654 123 3e-23 seq415 118 1e-21 seq1064 114 1e-20 seq1211 89.7 5e-13 >seq787 Length=122967 Score = 156 bits (172), Expect = 4e-33 Identities = 134/166 (81%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 117035 GAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCC 117094 |||||||||||||||| ||| ||||| |||||| ||||||| || ||||| ||| |||| Sbjct 88204 GAGCGCCTGGTGGCCTACGCCGCCGTGGAGGGCATCTTCTTCTCAGGCAGCTTCTGCGCC 88145 Query 117095 ATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATC 117154 || || ||||||||||| ||||||||||||||||| || || ||| ||||||||||||| Sbjct 88144 ATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTCACCTTCTCCAACGAGCTCATC 88085 Query 117155 TCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCA 117200 | | || ||||| ||||| ||||| | ||| |||||| || Sbjct 88084 AGCCGCGATGAGGGCCTGCACACAGACTTCGGCTGCCTGCTGTACA 88039 >seq723 Length=331235 Score = 123 bits (136), Expect = 3e-23 Identities = 118/151 (78%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095 |||||||| ||||||| || ||| |||||| || ||| || ||||| ||| ||||| Sbjct 27268 AGCGCCTGCTGGCCTTTGCCTGCGTGGAGGGCATCCACTTCTCCGGCAGCTTCTGCGCCA 27209 Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155 | || ||||||||||| || ||||| ||||| ||||| || ||| |||||||||||| Sbjct 27208 TCTTCTGGCTCAAGAAGCGGGGCCTTATGCCGGGCCTCACCTTCTCTAACGAGCTCATCA 27149 Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGC 117186 |||||| ||||| ||||| |||||||| Sbjct 27148 GCAGGGATGAGGGCCTGCACACTGACTTTGC 27118 Score = 89.7 bits (98), Expect = 5e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 116729 GACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATC 116788 |||||||||| || ||||||||| ||||||||||||| || |||| ||||||||||||| Sbjct 28367 GACAACGAGCAGCACTTCATCAAGTACGTGCTGGCCTTCTTTGCCGGCAGCGACGGCATC 28308 Query 116789 GTCAACGAGAATCTGGTCGAGCGTTTC 116815 || ||||| |||| || ||| ||| Sbjct 28307 GTGCTGGAGAACCTGGCCGTGCGCTTC 28281 >seq654 Length=867 Score = 123 bits (136), Expect = 3e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| | |||||||| || || |||| || ||||| |||||||| |||| ||| Sbjct 376 GGCATCCCTCCTGACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGC 435 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| |||||||||||||||||||||| |||||||||| || ||| ||||| || | Sbjct 436 ACCCTGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGC 495 Query 40912 GGCGGC 40917 |||||| Sbjct 496 GGCGGC 501 >seq415 Length=64367 Score = 118 bits (130), Expect = 1e-21 Identities = 104/130 (80%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| | |||||||| || || |||| || || || |||||||| |||| ||| Sbjct 63838 GGCATCCCTCCTGACCAGCAGCGCCTGATCTTTGCCGGTAAGCAGCTGGAGGACGGCCGC 63779 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| |||||||||| || ||| ||||| || | Sbjct 63778 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGC 63719 Query 40912 GGCGGCGGCT 40921 |||||| ||| Sbjct 63718 GGCGGCTGCT 63709 >seq1064 Length=71438 Score = 114 bits (126), Expect = 1e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||||||| | |||||||| || || |||| ||| ||||| |||||||| || | ||| Sbjct 25741 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGC 25800 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| | || ||||| || ||| ||||| || | Sbjct 25801 ACCCTGGCTGACTACAACATCCAGAAGGAGTCTACACTGCACCTGGTGCTGCGCCTGCGT 25860 Query 40912 GGCGGC 40917 |||||| Sbjct 25861 GGCGGC 25866 Score = 111 bits (122), Expect = 2e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| | |||||||| || || |||| || ||||| |||||||| || | |||| Sbjct 28359 GGCATCCCTCCCGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGC 28418 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| ||||||| || || ||| ||||| || | Sbjct 28419 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTACACCTGGTGCTGCGCCTGCGC 28478 Query 40912 GGCGGC 40917 || ||| Sbjct 28479 GGTGGC 28484 Score = 105 bits (116), Expect = 7e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||| ||| | |||||||| || || |||| || ||||| |||||||| || | ||| Sbjct 26183 GGCATTCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGC 26242 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| ||||||| || || ||| ||||| || | Sbjct 26243 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTACACCTGGTGCTGCGCCTGCGC 26302 Query 40912 GGCGGC 40917 || ||| Sbjct 26303 GGTGGC 26308 Score = 105 bits (116), Expect = 7e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||| ||| | |||||||| || || |||| || ||||| |||||||| || | ||| Sbjct 26738 GGCATTCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGC 26797 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| ||||||| || || ||| ||||| || | Sbjct 26798 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTACACCTGGTGCTGCGCCTGCGC 26857 Query 40912 GGCGGC 40917 || ||| Sbjct 26858 GGTGGC 26863 Score = 105 bits (116), Expect = 7e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 ||||| ||| | |||||||| || || |||| || ||||| |||||||| || | ||| Sbjct 27296 GGCATTCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGC 27355 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| ||||||||||||||||||||| ||||||| || || ||| ||||| || | Sbjct 27356 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTTCACCTGGTGCTGCGCCTGCGC 27415 Query 40912 GGCGGC 40917 || ||| Sbjct 27416 GGTGGC 27421 Score = 105 bits (116), Expect = 7e-18 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| | |||||||| || || |||| || ||||| |||||||| || | ||| Sbjct 27828 GGCATCCCTCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGC 27887 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGG 40911 ||||| || |||||||||||||||||| |||||||||| || ||| ||||| || | Sbjct 27888 ACCCTGGCTGATTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGC 27947 Query 40912 GGCGGC 40917 || ||| Sbjct 27948 GGTGGC 27953 >seq1211 Length=79214 Score = 89.7 bits (98), Expect = 5e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| | |||||||| || || |||| || ||||| |||||||| |||| ||| Sbjct 79126 GGCATCCCTCCTGACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGC 79185 Query 40852 ACCCTCAACGACTACAACATCCAGAAGGA 40880 ||||| ||||||||||||||||||||| Sbjct 79186 ACCCTGGCCGACTACAACATCCAGAAGGA 79214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515210389751680