Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq78 87.8 2e-12 seq1064 84.2 3e-11 seq415 84.2 3e-11 >seq78 Length=354265 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||| | |||| || |||||||||||| ||||||||||||| || || | Sbjct 344589 CGCAGCACGAGGTGCAGCGTTGACTCCTTTTGAATGTTGTAATCAGCCAAGGTGCGGCCA 344530 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || || || ||||| ||||||||||| | || | | ||||||| Sbjct 344529 TCCTCCAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCTGGGGGAATACCCTCCTTG 344470 Query 43089 TCC 43091 ||| Sbjct 344469 TCC 344467 >seq1064 Length=71438 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| |||||| || || ||||| |||||||| || || | Sbjct 25853 CGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCA 25794 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || || |||||||| |||||||| || || ||||||||||| Sbjct 25793 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 25753 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| |||||| || || |||||||||||||| || || | Sbjct 27940 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGCCAGGGTGCGGCCA 27881 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || || |||||||| ||||| || || || ||||||||||| Sbjct 27880 TCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTC 27840 Score = 82.4 bits (90), Expect = 9e-11 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| || | ||| |||||| || || ||||| |||||||| || ||| | Sbjct 28471 CGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGCCCA 28412 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 43071 || || |||||||| ||||| || || || ||||||||||||| Sbjct 28411 TCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGG 28369 >seq415 Length=64367 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| |||| ||| |||||| || || ||||| |||||||| || || || Sbjct 63726 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCG 63785 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTC 43069 || || ||||||||||| || || || || ||||||||||| Sbjct 63786 TCCTCCAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTC 63826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571807821919040