Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq723 107 2e-18 >seq723 Length=331235 Score = 107 bits (118), Expect = 2e-18 Identities = 175/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Minus Query 23257 GTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACA 23316 ||||| ||| ||||| || | || | ||| ||||| || |||| | |||| || Sbjct 246525 GTACAGCGCCTCAAACTCCTCGCCCCACACGTCAGCCAGCCCAGGCGCCTCATTCGGGCA 246466 Query 23317 CATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAG 23376 | || ||||| | || | || ||||| ||| || || || ||||| || Sbjct 246465 GAACAGGCTCCAGTCGGTGTTGCTCTCCACGCGCTGCATGAACAGGTCGTTGATCCACAG 246406 Query 23377 AGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAA 23436 |||||||||| |||||||||||| ||||||| |||||| |||||| || |||| Sbjct 246405 GCCGTAGAACAGGTCGCGGGCGCGCGCCTCCTCCTTGCCGTGGTTCTTGCGCATGTCCAG 246346 Query 23437 AAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTT 23496 | || || | ||| || ||||||||||| ||||| | ||| ||||||||| | ||| Sbjct 246345 CCACTCAAATATGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGCGCCCTTGCGCTT 246286 Query 23497 ATTGCCGCCCTG 23508 ||||||||| Sbjct 246285 GCCGCCGCCCTG 246274 Score = 104 bits (114), Expect = 2e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122 |||||||| || || || || || || ||||| ||||| || ||||||| || |||| Sbjct 246965 GTGTACTCCACGATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGG 246906 Query 23123 TTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGC 23182 ||||| || || ||||| ||||||||||||||||| || |||| ||||||| |||| Sbjct 246905 TTGCTCTTGCGGTTGCAGCTGTCCTTGTAGAGCATGTAGGGGTTGCCGGTCTCGATCTGC 246846 Query 23183 GACTCGA 23189 | ||||| Sbjct 246845 GCCTCGA 246839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445758777394560