Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq723 116 5e-21 seq787 113 7e-20 >seq723 Length=331235 Score = 116 bits (128), Expect = 5e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 97199 GGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAG 97258 ||| ||| | ||||| || | || ||||| ||||||||||| | | || ||||| || Sbjct 246843 GGCGCAGATCGAGACCGGCAACCCCTACATGCTCTACAAGGACAGCTGCAACCGCAAGAG 246902 Query 97259 CAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTA 97318 |||||| | || |||||||||||||| || ||| ||||||||||| || || ||||| Sbjct 246903 CAACCAGCAGAACCTGGGCACCATCAAGTGCAGCAACCTGTGCACGGAGATCGTGGAGTA 246962 Query 97319 CGCCTCTCCGGACGAGACGGCAGTTTGCGTTCTGGCATC 97357 | || | || || ||||| ||||| ||| |||||||| Sbjct 246963 CACCGCGCCTGATGAGACCGCAGTGTGCAACCTGGCATC 247001 Score = 89.7 bits (98), Expect = 8e-13 Identities = 116/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTT 125485 ||| |||| || ||| ||| ||||||||| ||| || || || || |||| ||||||| Sbjct 27263 CTGCTGGCCTTTGCCTGCGTGGAGGGCATCCACTTCTCCGGCAGCTTCTGCG-CCATCTT 27205 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545 |||||||||||||| || || ||||| || || || | ||||||| | || | Sbjct 27204 CTGGCTCAAGAAGCGGGGCCTTATGCCGGGCCTCACCTTCTCTAACGAGCTCATCAGCAG 27145 Query 125546 AGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT 125583 || |||||||| ||| ||||||||| | || |||| Sbjct 27144 GGATGAGGGCCTGCACACTGACTTTGCGGTGCTGCTGT 27107 Score = 86.0 bits (94), Expect = 9e-12 Identities = 172/255 (67%), Gaps = 0/255 (0%) Strand=Plus/Plus Query 96875 ACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGA 96934 |||||||||| || || ||||| | ||| ||||| |||| || |||||||| || Sbjct 246273 ACAGGGCGGCGGCAAGCGCAAGGGCGCGTTCGCCATCTACCTGGAGCCGTGGCACGCCGA 246332 Query 96935 CGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGA 96994 | | ||||| | | || |||||||| ||| ||| || ||||| || ||| | || Sbjct 246333 CATATTTGAGTGGCTGGACATGCGCAAGAACCACGGCAAGGAGGAGGCGCGCGCCCGCGA 246392 Query 96995 CTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTA 97054 | |||| || | || ||| | || |||||||| ||||||| | | | | Sbjct 246393 CCTGTTCTACGGCCTGTGGATCAACGACCTGTTCATGCAGCGCGTGGAGAGCAACACCGA 246452 Query 97055 CTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTT 97114 ||||||||| | ||||| | | | || || ||| | || |||||||| ||||| Sbjct 246453 CTGGAGCCTGTTCTGCCCGAATGAGGCGCCTGGGCTGGCTGACGTGTGGGGCGAGGAGTT 246512 Query 97115 TGAGGCCAAGTACAC 97129 |||||| |||||| Sbjct 246513 TGAGGCGCTGTACAC 246527 >seq787 Length=122967 Score = 113 bits (124), Expect = 7e-20 Identities = 113/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTT 125485 |||||||| | ||||||||| |||||||||||||| || || || || |||| ||||||| Sbjct 88198 CTGGTGGCCTACGCCGCCGTGGAGGGCATCTTCTTCTCAGGCAGCTTCTGCG-CCATCTT 88140 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545 ||||||||||||||||| ||||||||||| || || | |||||| | || || Sbjct 88139 CTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTCACCTTCTCCAACGAGCTCATCAGCCG 88080 Query 125546 AGACGAGGGCCTACACTGTGACTT 125569 || |||||||| ||| ||||| Sbjct 88079 CGATGAGGGCCTGCACACAGACTT 88056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741046527887680