Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq1185 84.2 4e-11 seq616 84.2 4e-11 seq188 84.2 4e-11 >seq1185 Length=139037 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 273286 GACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACCAACTGCGCTACACTCC 273345 || |||||| |||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 80913 GATTCGAACCAACGACATCCTGCTCCCAAAGCAGGCACGCTACCAACTGCGTTACACTCT 80972 Query 273346 GTATTT 273351 || ||| Sbjct 80973 GTTTTT 80978 >seq616 Length=69036 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 273286 GACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACCAACTGCGCTACACTCC 273345 || |||||| |||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 66127 GATTCGAACCAACGACATCCTGCTCCCAAAGCAGGCACGCTACCAACTGCGTTACACTCT 66068 Query 273346 GTATTT 273351 || ||| Sbjct 66067 GTTTTT 66062 >seq188 Length=89735 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 273286 GACTCGAACTCCCGACATCCTGCTCCCAAAGCAGGCGCGCTACCAACTGCGCTACACTCC 273345 || |||||| |||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 85643 GATTCGAACCAACGACATCCTGCTCCCAAAGCAGGCACGCTACCAACTGCGTTACACTCT 85584 Query 273346 GTATTT 273351 || ||| Sbjct 85583 GTTTTT 85578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896925462312320