Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1275 132 8e-27 seq183 131 3e-26 seq272 120 5e-23 seq76 120 5e-23 >seq1275 Length=309223 Score = 132 bits (146), Expect = 8e-27 Identities = 177/246 (72%), Gaps = 0/246 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| || ||||| || || ||||||||||| || ||| | ||||||||||| || ||| Sbjct 73977 CTTCGCGACAACATTCAGGGCATCACCAAGCCCGCCATCAGGCGTCTGGCTCGCCGCGGT 74036 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| || || || |||| || |||| || | ||| | ||| | ||| Sbjct 74037 GGTGTCAAGCGTATCAGCGGTCTGATCTACGAGGAGACCCGCGGTGTGCTCAAGGTGTTC 74096 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| |||| | | |||||| | ||| || |||||||| | || ||||| || Sbjct 74097 CTGGAGAACGTTGTGCGTGATGCAGTGACCTACACTGAGCACGCCAGGCGCAAGACCGTG 74156 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || |||||||| | ||||| || | || || || ||||| | | || || ||||| Sbjct 74157 ACTGCCATGGATGTTGTCTACGCCCTCAAGCGCCAGGGCCGCACCCTGTACGGCTTTGGC 74216 Query 16694 AGTTAA 16699 ||||| Sbjct 74217 GGTTAA 74222 >seq183 Length=115837 Score = 131 bits (144), Expect = 3e-26 Identities = 191/270 (71%), Gaps = 0/270 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| || || || |||||||| || |||||||||||||| ||| Sbjct 2905 GCCAAGCGCCACCGCAAGGTGCTCCGCGACAACATCCAGGGCATCACCAAGCCAGCCATC 2964 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 | ||||| ||||| |||||||| || ||||| || || | |||| || |||| Sbjct 2965 AGGCGTCTCGCTCGCCGTGGTGGTGTTAAGCGCATCAGCGGCCTCATCTACGAGGAGACC 3024 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| | ||||| ||| |||| | | |||||| || ||| || ||| Sbjct 3025 CGCGGTGTGCTCAAGGTGTTCCTGGAGAACGTTGTGCGTGATGCAGTCACCTACACAGAG 3084 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| | || |||||||| || ||||||| | ||||| || |||| || || ||| Sbjct 3085 CACGCCAGGCGCAAGACTGTGACTGCCATGGACGTTGTCTACGCCCTGAAGCGCCAGGGC 3144 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCT 16702 || | | || || || || ||||| || Sbjct 3145 CGCACCCTGTACGGCTTCGGCGGTTAAGCT 3174 Score = 120 bits (132), Expect = 5e-23 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||| | ||||||||||| |||||| Sbjct 1631 CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCAGGCGTCTGGCTCGCCGTGGT 1690 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| || || | |||| || |||| || | || | ||| | ||| Sbjct 1691 GGTGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTC 1750 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| |||| | | |||||| | ||| || |||||||| | || ||||| || Sbjct 1751 CTGGAGAACGTTGTGCGTGATGCAGTGACCTACACTGAGCACGCCAGGCGCAAGACCGTG 1810 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| | || ||||| |||| || || ||||| Sbjct 1811 ACTGCCATGGACGTGGTGTATGCCCTGAAGCGCCAGGGCCG 1851 >seq272 Length=428047 Score = 120 bits (132), Expect = 5e-23 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||| | ||||||||||| |||||| Sbjct 196796 CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCAGGCGTCTGGCTCGCCGTGGT 196855 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| || || | |||| || |||| || | ||| | ||| | ||| Sbjct 196856 GGTGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGACCCGCGGTGTGCTCAAGGTGTTC 196915 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| |||| | | |||||| | ||| || |||||||| | || ||||| || Sbjct 196916 CTTGAGAACGTTGTGCGTGATGCAGTGACCTACACTGAGCACGCCAGGCGCAAGACCGTG 196975 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| | || || || |||| || || ||||| Sbjct 196976 ACTGCCATGGACGTGGTGTACGCCCTGAAGCGCCAGGGCCG 197016 Score = 120 bits (132), Expect = 5e-23 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||| | ||||||||||| |||||| Sbjct 206211 CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCAGGCGTCTGGCTCGCCGTGGT 206152 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| || || | |||| || |||| || | ||| | ||| | ||| Sbjct 206151 GGTGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGACCCGCGGTGTGCTCAAGGTGTTC 206092 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| |||| | | |||||| | ||| || |||||||| | || ||||| || Sbjct 206091 CTTGAGAACGTTGTGCGTGATGCAGTGACCTACACTGAGCACGCCAGGCGCAAGACCGTG 206032 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| | || || || |||| || || ||||| Sbjct 206031 ACTGCCATGGACGTGGTGTACGCCCTGAAGCGCCAGGGCCG 205991 Score = 120 bits (132), Expect = 5e-23 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||| | ||||||||||| |||||| Sbjct 309392 CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCAGGCGTCTGGCTCGCCGTGGT 309451 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| || || | |||| || |||| || | || | ||| | ||| Sbjct 309452 GGTGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTC 309511 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| |||| | | |||||| | ||| || |||||||| | || ||||| || Sbjct 309512 CTGGAGAACGTTGTGCGTGATGCAGTGACCTACACTGAGCACGCCAGGCGCAAGACCGTG 309571 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| | || ||||| |||| || || ||||| Sbjct 309572 ACTGCCATGGACGTGGTGTATGCCCTGAAGCGCCAGGGCCG 309612 Score = 120 bits (132), Expect = 5e-23 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||| | ||||||||||| |||||| Sbjct 329104 CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCAGGCGTCTGGCTCGCCGTGGT 329045 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| || || | |||| || |||| || | ||| | ||| | ||| Sbjct 329044 GGTGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGACCCGCGGTGTGCTCAAGGTGTTC 328985 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| |||| | | |||||| | ||| || |||||||| | || ||||| || Sbjct 328984 CTGGAGAACGTTGTGCGTGATGCAGTGACCTACACTGAGCACGCCAGGCGCAAGACCGTG 328925 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| | || || || |||| || || ||||| Sbjct 328924 ACTGCCATGGACGTGGTGTACGCCCTGAAGCGCCAGGGCCG 328884 >seq76 Length=308074 Score = 120 bits (132), Expect = 5e-23 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||| | ||||||||||| |||||| Sbjct 95603 CTCCGCGACAACATCCAGGGCATCACCAAGCCCGCCATCAGGCGTCTGGCTCGCCGTGGT 95662 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || |||||||| || || | |||| || |||| || | ||| | ||| | ||| Sbjct 95663 GGTGTCAAGCGCATCAGCGGCCTCATCTACGAGGAGACCCGCGGTGTGCTCAAGGTGTTC 95722 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| |||| | | |||||| | ||| || |||||||| | || ||||| || Sbjct 95723 CTGGAGAACGTTGTGCGTGATGCAGTGACCTACACTGAGCACGCCAGGCGCAAGACCGTG 95782 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| | || || || |||| || || ||||| Sbjct 95783 ACTGCCATGGACGTGGTGTACGCCCTGAAGCGCCAGGGCCG 95823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073949228024