Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq21 585 3e-162 >seq21 Length=95773 Score = 585 bits (648), Expect = 3e-162 Identities = 742/1018 (73%), Gaps = 2/1018 (0%) Strand=Plus/Plus Query 137861 ATGGTTCGATGTCTTGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTC 137920 |||||| |||| | ||||||||| | | ||| || || |||||||| |||||||| Sbjct 40261 ATGGTTTGATGACGCTGATGACTGGTTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTC 40320 Query 137921 TGGACTACTACTTTTTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAAC 137980 || || || |||||||| ||| || || || || || || ||| ||||||| ||||| Sbjct 40321 AGGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACAAC 40380 Query 137981 GTTTGTTACAAGCTGGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAATTT 138040 ||||| ||| ||||| || || ||||| || || ||| | ||||| ||| || Sbjct 40381 TTTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 40440 Query 138041 CCTCACAGCAGCTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-T 138099 | | || || || ||||| || ||||| | ||||| || || || || | ||| | Sbjct 40441 CTTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGGCACACTCA-TTATTATTCTTAT 40499 Query 138100 GGGGTCCTGAGTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGACTT 138159 ||||||| || ||||||| ||| | || |||| ||| | || || | ||||| | Sbjct 40500 GGGGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACAT 40559 Query 138160 TTGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGATCT 138219 |||| || | || || | ||| || | |||||||||||| | || || ||||| || Sbjct 40560 TTGTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAATTG 40619 Query 138220 CTCGTCTGGTAGGCATCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGTGT 138279 | ||| ||| | | ||||| ||||| || || || || || | ||| || ||||| | Sbjct 40620 CACGTTCAGTAAACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCTGTTT 40679 Query 138280 TCGTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTCCT 138339 | || || ||| | || || || || || ||||| ||||||||||||| || | Sbjct 40680 TTGTTTCAGTATTCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCTAGTT 40739 Query 138340 TTGGTGTGGCAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGACCC 138399 ||||||| || || |||||||| || | |||||| | || ||||| ||||||||||| Sbjct 40740 TTGGTGTTGCTGCTATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACTGGACAT 40799 Query 138400 TCAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGCTA 138459 | ||||| || ||||||||||| || || ||| || | |||| |||| | | ||||||| Sbjct 40800 TAAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTA 40859 Query 138460 TTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTTTA 138519 |||| |||||||| || ||||| || || | ||||||||| || |||| || || Sbjct 40860 TTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGATGGTGCAAACACATTCC 40919 Query 138520 AAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACT 138579 |||||| | || ||||||| |||||||| || || ||||| ||||| ||||||| || Sbjct 40920 GTGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCTATGGTAACTGCGAACCGTTTCT 40979 Query 138580 GGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCTCT 138639 |||| ||||| ||||| ||||||| || || ||||||||||||||||||||| | | Sbjct 40980 GGTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGTTGGCTTCACTTCTTTATGTTAT 41039 Query 138640 TTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAACC 138699 | ||||| || | || || |||| | |||||| || ||||| | ||||| ||| Sbjct 41040 TAGTTCCGGTAACAGGACTATGGATGTCTGCGATTGGTGTTGTTGGTTTAGCTCTAAACT 41099 Query 138700 TACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGA 138759 |||| || ||||| |||||||| |||||||||||||| || ||||| || || ||||| | Sbjct 41100 TACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCTGCTGAAGACCCAGAGTTCGAAA 41159 Query 138760 CCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGG 138819 | ||||| || || || ||| | | ||||||||| | ||||| ||||||||| || | Sbjct 41160 CTTTCTATACTAAAAATATTTTATTAAATGAAGGTATTCGTGCTTGGATGGCTGCTCAAG 41219 Query 138820 ATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 | ||||| |||||| || || || |||||||||||||| || | || |||||||| Sbjct 41220 ACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCT 41277 Score = 347 bits (384), Expect = 2e-90 Identities = 347/450 (77%), Gaps = 0/450 (0%) Strand=Plus/Plus Query 135878 GTTTTCCAGGCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGG 135937 |||||||| || ||||| |||||||| ||||| |||||||||||||| || || ||||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 135938 GTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTA 135997 || || |||||||| | |||||||||||||| || || | || || || | | | Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 135998 CGTGAGACGACTGAGGTAGAATCCCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAG 136057 ||||| || ||||| ||||| ||| | || ||||| ||||||||||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 136058 ACTTACAACATTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCG 136117 ||||||||||| || || || || |||||||| |||||| | ||||||||||| || || Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 136118 TTCAACAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGG 136177 ||||||||||||||||| ||||||| ||| | ||||||||||| ||||| ||||| ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 136178 TTTGCTGCCCTGGGCGTATCTACGATGGCGTTCAACCTCAATGGATTCAACTTCAACCAG 136237 || |||| | || | || || ||||| |||||||| || || |||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 136238 TCCATTGTATCTTCTGAAGGTCGTGTACTCAACACCTGGGCAGATGTGCTGAATCGTGCT 136297 || |||| ||| |||||||||| | ||||| ||||| || | | || |||||| Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 136298 GGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 | |||||||| || |||||||| ||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGT 17823 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 135602 TTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTAT 135661 ||||| || || ||||||||||||||| | ||||||||| |||| || ||||||||||| Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 135662 CAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAA 135721 ||| || | || | |||||| | | ||| ||| || |||||||||||| ||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 135722 CTCTCTTACCGACTGGGTATGC 135743 | |||||||| | ||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Score = 131 bits (144), Expect = 2e-25 Identities = 110/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 135740 ATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTC 135799 ||||| ||||||||| ||| |||||||| || || ||||| |||||||||||||| ||| Sbjct 16127 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 16186 Query 135800 CTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCATTTCTGGA 135859 | ||||||| | ||||||||||||||| ||| |||||||| | || ||||| ||| Sbjct 16187 ATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGGA 16246 Query 135860 ACTTTTAACTACATG 135874 ||||| |||| |||| Sbjct 16247 ACTTTCAACTTCATG 16261 Score = 129 bits (142), Expect = 7e-25 Identities = 173/238 (73%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 135364 TTGGGAACAGTTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTT 135423 ||||| || ||||| |||||| | || || || ||||| | || | |||||||| Sbjct 13073 TTGGGCACGTTTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTT 13132 Query 135424 TGGAACGCTGATGATTCCTACTCTTCTCGCAGCTGCTATCTGCTTT-ATTGTTGCTTTCA 135482 ||| | | ||||| ||||| | | | ||| || || | || || | ||||||| Sbjct 13133 TGGTGTGATCATGATCCCTACATTATTAACTGCTACT-TCAGTATTCATCATCGCTTTCA 13191 Query 135483 TCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGT 135542 ||||||| ||||| || ||||| || || ||||| || || ||| ||||||| || | | Sbjct 13192 TCGCTGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTAT 13251 Query 135543 ACGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCA 135600 ||||||| |||||||||||||||||||| | ||| || ||||| ||||| || || Sbjct 13252 ACGGAAACAACATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627957261747200