Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq21 309 9e-80 >seq21 Length=95773 Score = 309 bits (342), Expect = 9e-80 Identities = 361/485 (74%), Gaps = 2/485 (0%) Strand=Plus/Plus Query 19792 TCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTG 19851 |||| |||||||| ||||| || || |||||||| || ||||||||| | ||||| |||| Sbjct 17372 TCGTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTG 17431 Query 19852 GCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTCCTCGATCA 19911 | ||||| ||||| || | ||||||||||||||||| || |||||||| || | | Sbjct 17432 GTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAA 17491 Query 19912 TCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAAG 19971 || ||||||||||| | | ||| ||| | || || || ||||| ||||| |||| Sbjct 17492 TCCGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAG 17551 Query 19972 AGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTT 20031 | || || || || || || |||||||| |||||||| | || || || ||||| |||| Sbjct 17552 AAACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTT 17611 Query 20032 CTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATAT 20091 ||||||| || |||||||| ||||| ||||| | ||| ||| || || || || || | Sbjct 17612 CTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTT 17671 Query 20092 GGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACC 20151 || | || | | || || | |||||||||||||||||||| ||||| ||||| |||| Sbjct 17672 GGTTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACC 17731 Query 20152 AGTCAGTAGTTGATGTCA-ACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGA 20210 | ||||| |||||| ||| | || | | ||||||||||| | | || | Sbjct 17732 AATCAGTTGTTGAT-TCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGT 17790 Query 20211 GCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTA 20270 |||||| | || | |||||||||||||| || || ||||| ||||||||| | || ||| Sbjct 17791 GCTAACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCATTAGACTTA 17850 Query 20271 GCTTC 20275 || || Sbjct 17851 GCATC 17855 Score = 149 bits (164), Expect = 2e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||||||||| |||| ||| || ||||| | || | ||||||||||| || | Sbjct 13083 TTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGATC 13142 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| ||| || |||||||| | || || |||| || ||||| || || Sbjct 13143 ATGATCCCTACATTATTAACTGCTACTTCAGTATTCATCATCGCTTTCATCGCTGCTCCT 13202 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || |||||||| ||||| || |||||||||||||| || || ||| | ||||||||||| Sbjct 13203 CCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAAC 13262 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCA 19516 || || ||||| || |||||||| | || || || || || ||||| Sbjct 13263 ATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 86.0 bits (94), Expect = 2e-12 Identities = 106/143 (74%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 19518 TTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATAT 19577 || || || || |||||||| | ||||||||||||||||||||||||| ||||| || Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 19578 CAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGC--ATACGCTGGTAGACAGTGGG 19635 ||| | | || | |||||||| ||| ||| | || ||| ||| | |||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAG--GTATCTGCTGTTACATGGGTCGTGAGTGGG 14791 Query 19636 AACTATCTTACAGATTAGGAATG 19658 || |||||||| | ||||| ||| Sbjct 14792 AATTATCTTACCGTTTAGGTATG 14814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144439253546208