Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq21 358 1e-93 >seq21 Length=95773 Score = 358 bits (396), Expect = 1e-93 Identities = 371/486 (76%), Gaps = 0/486 (0%) Strand=Plus/Plus Query 212072 TCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAG 212131 |||| |||||||| ||||||||||| ||||||||||| ||||| ||| |||||| || | Sbjct 17372 TCGTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTG 17431 Query 212132 GTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTA 212191 || | || ||||| ||||||||||||||||||||||||| | ||||| || || | | Sbjct 17432 GTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAA 17491 Query 212192 TCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAG 212251 |||||||||| |||| || || ||| | || ||||| ||||| |||||||||| Sbjct 17492 TCCGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAG 17551 Query 212252 AGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCAT 212311 | || || |||||||| || ||||| || ||||| ||| | | |||||||| || || | Sbjct 17552 AAACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTT 17611 Query 212312 CATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTAT 212371 | ||||||||| | |||||||||||| | || | ||||| ||| | || | | Sbjct 17612 CTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTT 17671 Query 212372 GGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACC 212431 |||| || || | ||||| | || ||||| |||||||| || || ||||||||||||| Sbjct 17672 GGTTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACC 17731 Query 212432 AATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAG 212491 |||||||||||||| || |||| ||| | || |||| ||| | | ||| | | Sbjct 17732 AATCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTG 17791 Query 212492 CAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAG 212551 | ||| | ||||||||||||||||||||| | || || |||||||||||| | ||||||| Sbjct 17792 CTAACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCATTAGACTTAG 17851 Query 212552 CATCTG 212557 |||||| Sbjct 17852 CATCTG 17857 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 211570 TTCTGCGACTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTT 211629 ||||| || ||| | || || || | ||| | | || | |||||||||||||| | Sbjct 13083 TTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGATC 13142 Query 211630 ATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCACCT 211689 |||||||| | || |||| || || || ||| | || |||||||| || ||| Sbjct 13143 ATGATCCCTACATTATTAACTGCTACTTCAGTATTCATCATCGCTTTCATCGCTGCTCCT 13202 Query 211690 CCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAAC 211749 || || |||||||| || |||||||| ||||| |||||||||| | || || |||||| Sbjct 13203 CCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAAC 13262 Query 211750 ATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 211791 |||||||||||||| || ||||| |||||||||| |||||| Sbjct 13263 ATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGT 13304 Score = 132 bits (146), Expect = 8e-26 Identities = 115/142 (81%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 211929 TTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGC 211988 ||||| |||||||||||||| ||| ||||| || ||||| || |||| ||| || Sbjct 16122 TTTAG--ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 16179 Query 211989 TGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTAT 212048 ||||||| | | ||||| |||| || ||||| ||||| |||||||||||||||||||| Sbjct 16180 TGTATTCATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTAT 16239 Query 212049 ATCAGGAACATTCAACTTCATG 212070 |||||||| |||||||||||| Sbjct 16240 TTCAGGAACTTTCAACTTCATG 16261 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 211798 TTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTAC 211857 ||||| || || |||||||| || || | ||||||||| | ||||| |||||||||||| Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 211858 CAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAA 211917 || || | | | |||||| | | || |||| |||||||| | |||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 211918 CTTTCATACCGTTTAGGTATGC 211939 | || |||||||||||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807541390806080