Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq21 468 6e-127 >seq21 Length=95773 Score = 468 bits (518), Expect = 6e-127 Identities = 730/1044 (70%), Gaps = 25/1044 (2%) Strand=Plus/Plus Query 171791 ATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTC 171850 ||||||||| | |||||| |||||| ||| ||||||||||| | || ||||| Sbjct 40261 ATGGTTTGATGACGCTGATGACTGGTTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTC 40320 Query 171851 TGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTAC 171910 |||||| | ||||| |||||||| ||| | ||| | ||||||||||| || || || Sbjct 40321 AGGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACAAC 40380 Query 171911 TTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTT 171970 ||| || || |||||||| |||||||| | || | || || | || || ||||| Sbjct 40381 TTTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 40440 Query 171971 TTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTC--TATTGTTCCTA 172028 |||||||| ||||| |||||||||| | ||||| || | || |||| ||| || Sbjct 40441 CTTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGG--CACACTCATTATTATTCTTA 40498 Query 172029 TGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAAC 172088 ||||| || || || ||||| ||| || || |||| |||||||||||| |||||| Sbjct 40499 TGGGGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACA 40558 Query 172089 TTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATT 172148 ||||| || |||||||| ||||| | || || |||||| | | || ||||| ||| Sbjct 40559 TTTGTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAATT 40618 Query 172149 GCAGGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTA 172208 ||| | || ||||||||||||| || | || || ||||| |||||| || Sbjct 40619 GCACGTTCAGTAAACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCTGTT 40678 Query 172209 TTCACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCA 172268 || | || |||| || |||||||| || |||||||||| |||||| Sbjct 40679 TTTGTTTCAGTATTCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCTAGT 40738 Query 172269 TTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACT 172328 |||||||| || || ||||| |||| |||||| ||| | || ||||| || || || Sbjct 40739 TTTGGTGTTGCTGCTATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACTGGACA 40798 Query 172329 CTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCC 172388 | || ||||| |||||||||||||| || ||| | | |||| || ||| ||||||| Sbjct 40799 TTAAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCT 40858 Query 172389 ATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGT 172448 || || ||||| || || | |||||||| | |||||| || | Sbjct 40859 ATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGA---------------TG--GTG 40901 Query 172449 AAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGT 172508 | | | ||| | || ||| | ||||| | || || || | ||||||||||| | Sbjct 40902 ATGGTGCAAAC----ACATTCCGTGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCT 40957 Query 172509 ATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGA 172568 ||| | ||||| ||| | ||||||||||| || |||||| | || || ||||||||| | Sbjct 40958 ATGGTAACTGCGAACCGTTTCTGGTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGT 41017 Query 172569 TTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGT 172628 | | |||||| ||||||| || || || || | || | |||| || | || ||| Sbjct 41018 TGGCTTCACTTCTTTATGTTATTAGTTCCGGTAACAGGACTATGGATGTCTGCGATTGGT 41077 Query 172629 ATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCA 172688 | || ||| | || || ||| | | || || ||||| ||||| ||||| || | || Sbjct 41078 GTTGTTGGTTTAGCTCTAAACTTACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCT 41137 Query 172689 GCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATG 172748 || |||||||||||||| ||||| ||||| ||||| || ||| | | ||||||||||| Sbjct 41138 GCTGAAGACCCAGAGTTCGAAACTTTCTATACTAAAAATATTTTATTAAATGAAGGTATT 41197 Query 172749 AGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTC 172808 | || |||||| | || || ||||| || || || || ||||| |||||||| Sbjct 41198 CGTGCTTGGATGGCTGCTCAAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTA 41257 Query 172809 TTGCCACGAGGCAACGCACTATAA 172832 || || || || ||||| |||||| Sbjct 41258 TTACCTCGTGGTAACGCTCTATAA 41281 Score = 363 bits (402), Expect = 2e-95 Identities = 372/486 (77%), Gaps = 0/486 (0%) Strand=Plus/Plus Query 171168 TCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAG 171227 |||| |||||||| ||||| ||||| || |||||||| ||||| ||| ||||||||| | Sbjct 17372 TCGTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTG 17431 Query 171228 GTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAA 171287 || | || |||||| | ||| ||| ||||||||||| |||| || || ||| ||| Sbjct 17432 GTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAA 17491 Query 171288 TCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAG 171347 || | || |||||||| ||||| | ||| | || || || ||||| |||||||||| Sbjct 17492 TCCGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAG 17551 Query 171348 AAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCAT 171407 |||| || ||||| || || || || || ||||| ||| | ||||||||||| || || | Sbjct 17552 AAACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTT 17611 Query 171408 CATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTAT 171467 | |||||||||||||||||||||||||||||| | |||| | || || || || | | Sbjct 17612 CTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTT 17671 Query 171468 GGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACC 171527 |||| || || | ||||| | || ||||| |||||||||||||| ||||||||||||| Sbjct 17672 GGTTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACC 17731 Query 171528 AATCAGTTGTAGATGCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAG 171587 |||||||||| ||| || | || || || ||||||| || | | ||| | | Sbjct 17732 AATCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTG 17791 Query 171588 CAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAG 171647 | ||| | || |||||||||||||| ||| | || || |||||||||||| ||||| ||| Sbjct 17792 CTAACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCATTAGACTTAG 17851 Query 171648 CATCTG 171653 |||||| Sbjct 17852 CATCTG 17857 Score = 183 bits (202), Expect = 3e-41 Identities = 173/221 (78%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||||||||| | || || ||||| || || | ||| | |||||||||||||| | Sbjct 13083 TTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGATC 13142 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 |||||||| | |||||||| || | ||||| | || ||||||||||||||| Sbjct 13143 ATGATCCCTACATTATTAACTGCTACTTCAGTATTCATCATCGCTTTCATCGCTGCTCCT 13202 Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 170845 ||||| |||||||| || ||| | || |||||| | ||||| || ||||| || |||||| Sbjct 13203 CCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAAC 13262 Query 170846 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGG 170886 ||||||||||||||||||||||| |||||||||| || || Sbjct 13263 ATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGG 13303 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 171032 ATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTC 171091 ||| | |||||||| |||||| ||||| ||||| || | || || ||| |||||| Sbjct 16127 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 16186 Query 171092 CTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGT 171151 | | || || |||| || ||||| |||||||| |||||||| ||||||| ||||| Sbjct 16187 ATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGGA 16246 Query 171152 ACGTTCAACTTCATG 171166 || |||||||||||| Sbjct 16247 ACTTTCAACTTCATG 16261 Score = 96.9 bits (106), Expect = 4e-15 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 170894 TTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTAC 170953 ||||| || || |||||||| || || | || |||||||| |||||||| ||||||||| Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 170954 CAGTTAGTTATTTTCCACTTCCTTATTGGAATCT-CTGCCTACATGGGTAGACAGTGGGA 171012 || ||| | ||| |||||| | | || |||| ||| ||||||||| | ||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTG-TTACATGGGTCGTGAGTGGGA 14792 Query 171013 ACTATCATACAGACTAGGAATG 171034 | |||| ||| | |||| ||| Sbjct 14793 ATTATCTTACCGTTTAGGTATG 14814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570259048403520