Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq723 122 8e-23 seq1064 107 2e-18 seq654 104 2e-17 seq78 98.7 9e-16 seq415 96.9 3e-15 seq787 89.7 5e-13 seq1211 82.4 7e-11 >seq723 Length=331235 Score = 122 bits (134), Expect = 8e-23 Identities = 172/235 (73%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 145625 GCGATCGACGCCAAATTACAAACTGCCGTCTCCTC-GGCGTCGCTGTATTGTACGATCTC 145683 || || || |||| || || ||||| ||||| || |||| || |||| | |||||||| Sbjct 247007 GCAATGGATGCCAGGTTGCACACTGCGGTCTCATCAGGCG-CGGTGTACTCCACGATCTC 246949 Query 145684 GGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCA 145743 | ||||| ||||| || |||||||| ||||| || ||||| || || || | |||||| Sbjct 246948 CGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCA 246889 Query 145744 CGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTC---CACGATAAA 145800 |||||||||||||||||| || ||| ||||| | ||||| ||| |||| ||| Sbjct 246888 GCTGTCCTTGTAGAGCATGTAGGGGTTGCCGGTCTCGATCTGCGCCTCGAGCACGGCAAA 246829 Query 145801 ACGGTGCAAGTCCTGCGCACGCACCTGC-TGCTGGTAGCGGCCCTCTTCTTCGTA 145854 | || | |||||| |||||| | ||| || | |||||||| || || || Sbjct 246828 CC---ACAGCTGCTGCGCGCGCACCACCTTGCGGGCA-CGGCCCTCCTCCTCATA 246778 Score = 82.4 bits (90), Expect = 7e-11 Identities = 130/184 (71%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 46122 GTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGA 46181 ||||||| |||||||| || |||| || |||| || |||||||||| ||||| Sbjct 27297 GTGGATCGGCAGCAGCA--GCAGCTTT-GCGCAGCGCCTGCTGGCCTTTGCCTGCGTGGA 27241 Query 46182 GGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCAT 46241 |||| || || || ||||| || ||||||||| | |||| | |||| | || Sbjct 27240 GGGCATCCACTTCTCCGGCAGCTTCTGCGCCATCTTCTGGCTCAAGAAGCGGGGCCTTAT 27181 Query 46242 GCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTT 46301 ||| ||||| || || |||||||| || | || ||||||||||| || ||||| Sbjct 27180 GCCGGGCCTCACCTTCTCTAACGAGCTCATCAGCAGGGATGAGGGCCTGCACACTGACTT 27121 Query 46302 TGCG 46305 |||| Sbjct 27120 TGCG 27117 >seq1064 Length=71438 Score = 107 bits (118), Expect = 2e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | |||| || |||||||| || |||||||| || Sbjct 28484 GCCACCGCGCAGGCGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 28425 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| ||||| ||||||||||| || |||| | ||||||||||| ||||| Sbjct 28424 CAGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGAGG 28365 Query 131127 GATTCCT 131133 ||| ||| Sbjct 28364 GATGCCT 28358 Score = 104 bits (114), Expect = 2e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | || |||||||| || ||||||||||| Sbjct 27953 GCCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGC 27894 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || |||| | ||||||||||| ||||| Sbjct 27893 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGG 27834 Query 131127 GATTCCT 131133 ||| ||| Sbjct 27833 GATGCCT 27827 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | |||| || |||||||| || |||||||| || Sbjct 26308 GCCACCGCGCAGGCGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 26249 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 26248 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGG 26189 Query 131127 GATTCCT 131133 || ||| Sbjct 26188 AATGCCT 26182 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | |||| || |||||||| || |||||||| || Sbjct 26863 GCCACCGCGCAGGCGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 26804 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 26803 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGG 26744 Query 131127 GATTCCT 131133 || ||| Sbjct 26743 AATGCCT 26737 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || |||| |||||||| | || | || |||||||| || |||||||| || Sbjct 25866 GCCGCCACGCAGGCGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCAGC 25807 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| ||| |||| | ||||||||||| || || Sbjct 25806 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGGGGG 25747 Query 131127 GATTCCT 131133 ||| ||| Sbjct 25746 GATGCCT 25740 Score = 89.7 bits (98), Expect = 5e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||||||||||| |||||||| | || | || |||||||| || |||||||| || Sbjct 27421 GCCACCGCGCAGGCGCAGCACCAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCAGC 27362 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| ||||| ||||||||||| || |||| | ||||||||||| || || Sbjct 27361 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGG 27302 Query 131127 GATTCCT 131133 || ||| Sbjct 27301 AATGCCT 27295 >seq654 Length=867 Score = 104 bits (114), Expect = 2e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | || |||||||| || |||||||| ||| Sbjct 501 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 442 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| || |||| | ||||||||||| ||||| Sbjct 441 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGAGG 382 Query 131127 GATTCCT 131133 ||| ||| Sbjct 381 GATGCCT 375 >seq78 Length=354265 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||||||| | || | || ||||||||||||||||||||||| || |||||| Sbjct 344589 CGCAGCACGAGGTGCAGCGTTGACTCCTTTTGAATGTTGTAATCAGCCAAGGTGCGGCCA 344530 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| |||||||||||||| |||| | ||||||||||| || || || || || ||| Sbjct 344529 TCCTCCAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCTGGGGGAATACCCTCCTTG 344470 Query 131140 TC 131141 || Sbjct 344469 TC 344468 >seq415 Length=64367 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 |||| ||||||| |||||||| | || | || |||||||| || |||||||| || Sbjct 63712 AGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAG 63771 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || |||||| |||||| |||||||| || || |||| | ||||||||||| |||| Sbjct 63772 CCAGGGTGCGGCCGTCCTCCAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCAGGAG 63831 Query 131126 GGATTCCT 131133 |||| ||| Sbjct 63832 GGATGCCT 63839 >seq787 Length=122967 Score = 89.7 bits (98), Expect = 5e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 46133 GCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttt 46192 ||||| || | | || || ||||| ||||||||| || ||||||||| |||| | Sbjct 88224 GCAGCTCCTCCAGCTTTGCGGAGCGCCTGGTGGCCTACGCCGCCGTGGAGGGCATCTTCT 88165 Query 46193 tttCTGGCAGTTTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGA 46252 | || ||||| || ||||||||| | |||| | ||| |||||||||| || | Sbjct 88164 TCTCAGGCAGCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCCGGGCTCA 88105 Query 46253 CGTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTT 46301 | || ||||||||| || ||||| ||||||||||| || ||||| Sbjct 88104 CCTTCTCCAACGAGCTCATCAGCCGCGATGAGGGCCTGCACACAGACTT 88056 >seq1211 Length=79214 Score = 82.4 bits (90), Expect = 7e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 131044 TCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAG 131103 ||||| || |||||||| ||| || |||||| |||||| ||||||||||| || || Sbjct 79214 TCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAG 79155 Query 131104 ATTAAACGCTGCTGGTCCGGAGGGATTCCT 131133 || | ||||||||||| |||||||| ||| Sbjct 79154 ATCAGGCGCTGCTGGTCAGGAGGGATGCCT 79125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472004728581120