Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq654 96.9 3e-15 seq415 87.8 1e-12 seq1064 82.4 6e-11 >seq654 Length=867 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||||||||||||||| || ||||||||||||||| Sbjct 500 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 441 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 | ||| | ||||||||| || ||||| ||| | || || ||||| ||||| Sbjct 440 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTC 388 >seq415 Length=64367 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||||||||||||||| || ||||||||||| ||| Sbjct 63714 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 63773 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 | ||| | ||||||||| || || || ||| | || || ||||| ||||| Sbjct 63774 AGGGTGCGGCCGTCCTCCAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTC 63826 >seq1064 Length=71438 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || |||||||||||||| || ||||||||||| ||| Sbjct 26307 CCACCGCGCAGGCGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 26248 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 | ||| | | ||||||| || ||||| ||| | || || ||||| ||||| Sbjct 26247 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTC 26195 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || |||||||||||||| || ||||||||||| ||| Sbjct 26862 CCACCGCGCAGGCGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 26803 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 | ||| | | ||||||| || ||||| ||| | || || ||||| ||||| Sbjct 26802 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTC 26750 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || |||||||||||||| || ||||||||||| ||| Sbjct 27420 CCACCGCGCAGGCGCAGCACCAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 27361 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 | ||| | | ||||||| || ||||| ||| | || || ||||| ||||| Sbjct 27360 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTC 27308 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||||||||||||||| || |||||||| || ||| Sbjct 27952 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGCC 27893 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTC 16821 | ||| | | ||||||| || ||||| ||| | || || ||||| ||||| Sbjct 27892 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTC 27840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405081246170320