Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq286 145 2e-29 seq1175 122 2e-22 seq155 122 2e-22 seq797 113 9e-20 seq669 113 9e-20 seq306 113 9e-20 seq214 113 9e-20 seq186 113 9e-20 seq81 113 9e-20 seq14 113 9e-20 seq787 84.2 4e-11 >seq286 Length=93241 Score = 145 bits (160), Expect = 2e-29 Identities = 113/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 280215 GTCCTGACTGGCGAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGG 280274 || ||||| ||||||||| ||||||||||||| |||| |||||||| |||||| |||| Sbjct 25846 GTGCTGACCGGCGAGACCGAGGCCACTGAGGGCACCGTGTGGAAGCACCCCAACCTGCGC 25787 Query 280275 ATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCT 280334 || || ||||| || ||||||||||| |||||||||||| | |||||||||| ||| || Sbjct 25786 ATCGCCTACGTGGCACAGCACGCTTTTCACCACATCGAGCAGCACCTGGACAAGACCCCC 25727 Query 280335 AACCAATACATTCAG 280349 ||| | ||||| ||| Sbjct 25726 AACGAGTACATCCAG 25712 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 9/215 (4%) Strand=Plus/Minus Query 279759 GCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGG 279818 ||||| |||| ||||| |||||||| |||||||| |||| |||||| |||||| Sbjct 26661 GCCGACATCCTGCTGCTGGATGAGCCCACCAACCATCTGGATGTGCTCAACGTGGCCTGG 26602 Query 279819 CTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCT 279878 || | | | ||||| | | | || |||| || | ||| |||| ||| ||||||||| Sbjct 26601 CTGGAGGCGTACCTCATCGGCCTCAAGACCGTCACCTCCATCATCGTCAGCCACGACTCT 26542 Query 279879 GGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATG---AGCAAAATCTGAAGCTC 279935 || ||||| || ||||||||||| |||||| ||||| | | | || |||||| | Sbjct 26541 GGGTTCCTGGACCGCGTGTGCTCTGACATCATCCACTACGCCAACCGCAAGCTGAAGGTG 26482 Query 279936 TCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGC 279970 | |||| |||||||||||||| || ||||| Sbjct 26481 TACAAG------GGCAACCTGTCTGCCTTTGTGGC 26453 Score = 105 bits (116), Expect = 1e-17 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || ||||| ||||| |||| || ||||||||||| ||||||| ||||| ||||| ||| Sbjct 27631 GGCGAGGAGCTGTGCAACTGCGAGTTCTCGCTCGCCTATGGTGCCAAGATCCTGCTGAAC 27572 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | | | ||| || |||||||| || || || ||| ||||| || | | Sbjct 27571 AACGCCACCATGCGCCTCATCCGCGGCAACCGCTACGGCCTGTGCGGCCCCAACGGCGTG 27512 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| ||| || ||| | ||||| || ||||| ||| |||| || || ||| || Sbjct 27511 GGCAAGTCCACGCTGATGAGGGCCATCGCCAACGGCCAGGTGGACGGCTTCCCTCCGGCT 27452 Query 279525 TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATC 279560 ||| | | || ||||| || |||||||||||| Sbjct 27451 GACGAGCTGCGCACCGTGTACGTGGAGCACGACATC 27416 >seq1175 Length=260756 Score = 122 bits (134), Expect = 2e-22 Identities = 102/125 (82%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 279708 TCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTC 279767 || || || ||||||||||||||||| || | |||||||| || ||||| || || || Sbjct 16256 TCTGGCGGCTGGAAGATGAAGCTGGCGCTGGCGCGCGCCATGCTGCTGCGCGCAGACATC 16315 Query 279768 CTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCC 279827 || ||||| || ||||| ||||||||| |||||||||||||||| |||||||| | | | Sbjct 16316 CTGCTGCTGGACGAGCCCACCAACCACCTGGACACCACCAACGTGGCCTGGCTGGAGAAC 16375 Query 279828 TACCT 279832 ||||| Sbjct 16376 TACCT 16380 >seq155 Length=248206 Score = 122 bits (134), Expect = 2e-22 Identities = 102/125 (82%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 279708 TCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATGTC 279767 || || || ||||||||||||||||| || | |||||||| || ||||| || || || Sbjct 230822 TCTGGCGGCTGGAAGATGAAGCTGGCGCTGGCGCGCGCCATGCTGCTGCGCGCAGACATC 230763 Query 279768 CTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGTCC 279827 || ||||| || ||||| ||||||||| |||||||||||||||| |||||||| | | | Sbjct 230762 CTGCTGCTGGACGAGCCCACCAACCACCTGGACACCACCAACGTGGCCTGGCTGGAGAAC 230703 Query 279828 TACCT 279832 ||||| Sbjct 230702 TACCT 230698 >seq797 Length=1202 Score = 113 bits (124), Expect = 9e-20 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 294 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 353 Query 142564 CCCACATCGGGC 142575 |||||||||||| Sbjct 354 CCCACATCGGGC 365 >seq669 Length=397894 Score = 113 bits (124), Expect = 9e-20 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 391085 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 391026 Query 142564 CCCACATCGGGC 142575 |||||||||||| Sbjct 391025 CCCACATCGGGC 391014 >seq306 Length=73690 Score = 113 bits (124), Expect = 9e-20 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 19297 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 19238 Query 142564 CCCACATCGGGC 142575 |||||||||||| Sbjct 19237 CCCACATCGGGC 19226 >seq214 Length=54951 Score = 113 bits (124), Expect = 9e-20 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 34590 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 34649 Query 142564 CCCACATCGGGC 142575 |||||||||||| Sbjct 34650 CCCACATCGGGC 34661 >seq186 Length=14196 Score = 113 bits (124), Expect = 9e-20 Identities = 73/79 (92%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 1005 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 946 Query 142564 CCCACATCGG--GCAGAAG 142580 |||||||||| ||||||| Sbjct 945 CCCACATCGGGCGCAGAAG 927 >seq81 Length=305366 Score = 113 bits (124), Expect = 9e-20 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 61447 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 61388 Query 142564 CCCACATCGGGC 142575 |||||||||||| Sbjct 61387 CCCACATCGGGC 61376 Score = 113 bits (124), Expect = 9e-20 Identities = 68/72 (94%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 65040 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 65099 Query 142564 CCCACATCGGGC 142575 |||||||||||| Sbjct 65100 CCCACATCGGGC 65111 >seq14 Length=24219 Score = 113 bits (124), Expect = 9e-20 Identities = 73/79 (92%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||||||||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 930 GCCCGGTTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 871 Query 142564 CCCACATCGG--GCAGAAG 142580 |||||||||| ||||||| Sbjct 870 CCCACATCGGGCGCAGAAG 852 >seq787 Length=122967 Score = 84.2 bits (92), Expect = 4e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 251820 GTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGA 251879 |||||| || ||| || | | |||||| ||||| ||||| ||||||| ||||||||| Sbjct 88040 GTACAGCAGGCAGCCGAAGTCTGTGTGCAGGCCCTCATCGCGGCTGATGAGCTCGTTGGA 88099 Query 251880 CAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCC 251939 | || || ||||| | || || ||| ||||||||||||| ||||| ||| || Sbjct 88100 GAAGGTGAGCCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCC 88159 Query 251940 AGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGCTCAGCAAA 251990 ||||| | | ||||| || | | || || |||||||| ||||| Sbjct 88160 TGAGAAGAAGATGCCCTCCACGGCGGCGTAGGCCACCAGGCGCTCCGCAAA 88210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027818784590488