Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq723 183 6e-41 seq787 140 6e-28 seq365 86.0 1e-11 >seq723 Length=331235 Score = 183 bits (202), Expect = 6e-41 Identities = 244/339 (72%), Gaps = 0/339 (0%) Strand=Plus/Minus Query 244292 TTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTC 244351 |||| |||||||||||| |||||| | || |||||| ||| ||||||||| ||| Sbjct 248001 TTGACGCCCCACATGTCCTGCTGCAGGATGCCGCGGCTGACCGGGGAGCCCTCGTACGTC 247942 Query 244352 GGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATG 244411 ||| | || || || ||||||| | ||||| || || || |||||||||||| Sbjct 247941 TCGTACGTGCCCTCCACCTTGGCCAGCCTGCAGCTGGTCTCCAGCGCTGCGTAGTAGATG 247882 Query 244412 GTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGGGATGCCCATC 244471 ||||| ||||| |||||||| | || | | ||| | ||||| ||||| | | Sbjct 247881 GTCTCAAAGATGTCCTTGTTCAGCTGCACTGCATCGTCGCTGTCAAAGGGCATGCCGAGC 247822 Query 244472 ATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTG 244531 | || |||| ||| ||||| ||||||||||| | ||||||||| ||||| ||| ||||| Sbjct 247821 AGCAGGAAGGTGTCAGCCAGGCCCTGCACGCCCAGGCCGATGGGCCTGTGGCGCATGTTG 247762 Query 244532 GAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGG 244591 ||||| ||| | |||||| |||||| ||||||| | |||||| |||||| | Sbjct 247761 GAGCGGCGGGCCGACTCCGTGGGGTAGAAGTTGACGTCGATGATCTTGTTCAGGTTGGCG 247702 Query 244592 GTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCG 244630 |||| || ||| || || |||||| | ||||||| Sbjct 247701 GTGACCACGCGCGTCACCTCTGCCAGCTTGTCAAAGTCG 247663 Score = 136 bits (150), Expect = 7e-27 Identities = 129/165 (78%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 244688 GCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGG 244747 ||||||||||| || || ||| || | |||||||| || ||||| ||||| ||| Sbjct 246998 GCCAGGTTGCACACTGCGGTCTCATCAGGCGCGGTGTACTCCACGATCTCCGTGCACAGG 246939 Query 244748 TTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTG 244807 || |||||||||||||||||||||| ||| || ||| |||| ||||||| ||||||| Sbjct 246938 TTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGCTGTCCTTG 246879 Query 244808 TAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACG 244852 ||||||||| |||| |||||||||| ||| || |||| ||| Sbjct 246878 TAGAGCATGTAGGGGTTGCCGGTCTCGATCTGCGCCTCGAGCACG 246834 Score = 123 bits (136), Expect = 5e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 ||| | |||||| || ||| ||||||||| |||||| ||| |||| | |||||||| Sbjct 27263 CTGCTGGCCTTTGCCTGCGTGGAGGGCATCCACTTCTCCGGCAGCTTCTGCGCCATCTTC 27204 Query 42765 TGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 ||||||||| || || ||||| || ||||||||||| ||||| |||||||||||| Sbjct 27203 TGGCTCAAGAAGCGGGGCCTTATGCCGGGCCTCACCTTCTCTAACGAGCTCATCAGCAGG 27144 Query 42825 GACGAGGGGCTGCATAGGGACTTTGC 42850 || ||||| ||||| | |||||||| Sbjct 27143 GATGAGGGCCTGCACACTGACTTTGC 27118 Score = 122 bits (134), Expect = 2e-22 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 244081 CAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCT 244140 ||||||| ||| ||||| ||||| || ||||||||||||| ||||| |||||| Sbjct 248304 CAGGTGCTGGTTGACCACGGTGAACTCGCCGCTCAGCACGCGGCGCACGTAGATGTTGCT 248245 Query 244141 GCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCAT 244200 | || ||||||| || ||| |||||||||| ||||| ||||| || || ||||| Sbjct 248244 GGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCTTGCGGTGGGCAT 248185 Query 244201 GGGCGACACCAGCAGACTGTTCCTCACGCCGT 244232 ||||| ||||||||| ||||| | |||||||| Sbjct 248184 GGGCGCCACCAGCAGGCTGTTGCGCACGCCGT 248153 Score = 87.8 bits (96), Expect = 3e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 245187 CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGT 245246 ||||||| | |||||| | ||||| |||||||| | |||||||||||| ||||| Sbjct 246062 CGTTGAACACGCGCAGCATGGGCACAATGCCGTTGCTGGTGCCGTTGGTGCCGCGGATGT 246003 Query 245247 AGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGA 245306 || |||| || | | || |||| |||| ||||| | || ||||| |||| || Sbjct 246002 AGCTGCCCGTGGCGCGGATGTTGTGGATGCTGATGCCGATACCTCCGGCAGACTTGCTGA 245943 Query 245307 TGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTC 245352 ||| ||||| ||||| || ||| |||||||| |||||||| Sbjct 245942 TGACAGCGCACTCCTTGAGGGAGTCGTAGATGCCCTCGATGCTGTC 245897 >seq787 Length=122967 Score = 140 bits (154), Expect = 6e-28 Identities = 131/164 (80%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758 ||| | ||||| |||| ||||||| ||||||||||||||||| ||| |||| | || Sbjct 88204 GAGCGCCTGGTGGCCTACGCCGCCGTGGAGGGCATCTTCTTCTCAGGCAGCTTCTGCGCC 88145 Query 42759 ATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 ||||||||||||||| || || || |||||||| ||||||||||| ||||| ||||| Sbjct 88144 ATCTTCTGGCTCAAGAAGCGCGGCCTC-ATGCCCGGGCTCACCTTCTCCAACGAGCTCAT 88086 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT 42861 |||| | || ||||| ||||| | ||||| | |||||| |||| Sbjct 88085 CAGCCGCGATGAGGGCCTGCACACAGACTTCGGCTGCCTGCTGT 88042 Score = 93.3 bits (102), Expect = 8e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 42901 TCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGC 42960 ||| || |||||||| ||||| |||||||||||| ||||||| | | |||||| Sbjct 87783 TCCTGGAGATCATCACCGAGGCGGTGGAGATCGAGCAGGAGTTTGTGTGCGACGCGCTGC 87724 Query 42961 CCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCG 43020 ||||| ||| ||||||||||| | | |||||| || |||||||| ||| || || | Sbjct 87723 CCGTGGACCTCATCGGCATGAACGGCAAGCTCATGAGCCAGTACATCGAGTTTGTGGCAG 87664 Query 43021 ACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACT 43080 ||| || ||| | |||| | || | |||||| || | |||||| |||| Sbjct 87663 ACCGGCTGCTGGCGGCGCTGGGCAACGAGCGGCACTACAAGACCGCCAACCCCTTTGACT 87604 Query 43081 TTATGGAGAACATC 43094 ||||||| |||| Sbjct 87603 GGATGGAGATCATC 87590 >seq365 Length=29156 Score = 86.0 bits (94), Expect = 1e-11 Identities = 114/156 (73%), Gaps = 3/156 (2%) Strand=Plus/Plus Query 96101 TGGCCGTCGACGAGGGACAGTTCTTCCCCGACCTCTACGAGGGAGTCGTGCAGCTGCTG- 96159 ||||| |||| |||| ||||||||||| ||||| |||| || | || | || Sbjct 15313 TGGCCATCGATGAGGCGCAGTTCTTCCCAGACCTGGCCGAGTTCTGCGCGGAGGCGGTGG 15372 Query 96160 ACCGCG--GGCAAGTACGTGATCGTGGCGGCGCTGGACGGGGACTTTATGCAGCAGCCCT 96217 |||| | |||||| ||||||||||||||| ||| ||| ||||| || ||||| || Sbjct 15373 ACCGTGACGGCAAGCACGTGATCGTGGCGGGGCTCAGCGGCGACTTCCGGCGGCAGCGCT 15432 Query 96218 TCAAGCAGGTGACGGCGTTGGTGCCCATGGCGGACA 96253 || |||| |||||| | || |||| |||| |||| Sbjct 15433 TCGGGCAGCTGACGGAGCTGATGCCGCTGGCCGACA 15468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944323051799680