Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq654 100 2e-16 seq1064 96.9 3e-15 seq415 96.9 3e-15 seq78 86.0 5e-12 >seq654 Length=867 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || |||||| ||||||||| |||||||| || ||| Sbjct 500 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 441 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || |||| |||| |||||||||||||| |||||||||||||| || Sbjct 440 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTC 388 >seq1064 Length=71438 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| ||||||||| ||||||||| |||||||| || ||| Sbjct 27420 CCACCGCGCAGGCGCAGCACCAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 27361 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || | || |||| |||||||| ||||| |||||||||||||| || Sbjct 27360 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTC 27308 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || |||||| ||||||||| ||||||||||| ||| Sbjct 27952 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGCC 27893 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || | || |||| |||||||| ||||| |||||||||||||| || Sbjct 27892 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTC 27840 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || |||||| ||||||||| |||||||| || ||| Sbjct 28483 CCACCGCGCAGGCGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 28424 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| | || |||| |||||||| ||||| |||||||||||||| || Sbjct 28423 AGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTC 28371 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || |||||| ||||||||| |||||||| || ||| Sbjct 26307 CCACCGCGCAGGCGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 26248 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || | || |||| |||||||| ||||| |||||||||||||| || Sbjct 26247 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTC 26195 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || |||||| ||||||||| |||||||| || ||| Sbjct 26862 CCACCGCGCAGGCGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 26803 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || | || |||| |||||||| ||||| |||||||||||||| || Sbjct 26802 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTC 26750 >seq415 Length=64367 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| ||||||||||| || |||||| ||||||||| |||||||| || ||| Sbjct 63714 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 63773 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || |||| |||| ||||| |||||||| |||||||||||||| || Sbjct 63774 AGGGTGCGGCCGTCCTCCAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTC 63826 >seq78 Length=354265 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 33907 CTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT 33966 || || |||||||| || || ||||| |||||| |||||||||||||| ||||| Sbjct 344595 CTGAGGCGCAGCACGAGGTGCAGCGTTGACTCCTTTTGAATGTTGTAATCAGCCAAGGTG 344536 Query 33967 CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || | || |||| |||||||| ||||| || ||||||||||| || Sbjct 344535 CGGCCATCCTCCAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTC 344489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397055779977136