Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq787 93.3 5e-14 seq723 87.8 2e-12 seq211 87.8 2e-12 >seq787 Length=122967 Score = 93.3 bits (102), Expect = 5e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 126050 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGC 126109 || ||| ||| || ||||| || ||| |||||| || || |||||| || || ||| Sbjct 88056 AAGTCTGTGTGCAGGCCCTCATCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGCCCGGGC 88115 Query 126110 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCC 126169 ||||| || |||||||| | |||||| || || || || || ||||||||||| ||| Sbjct 88116 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCTGAGAAGAAGATGCCC 88175 Query 126170 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 ||||| ||| | || | || ||||| |||||| Sbjct 88176 TCCACGGCGGCGTAGGCCACCAGGCGCTCCGCAAAG 88211 >seq723 Length=331235 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 126043 CACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 126102 ||| ||||| || ||| || ||||| || | | |||||| || || |||||| || Sbjct 27114 CACCGCAAAGTCAGTGTGCAGGCCCTCATCCCTGCTGATGAGCTCGTTAGAGAAGGTGAG 27173 Query 126103 TCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAA 126162 || ||||| || ||||||||||| | |||||| || || || || || |||||| Sbjct 27174 GCCCGGCATAAGGCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGTG 27233 Query 126163 GATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 126205 ||| |||||||| || || || || | || |||| |||||| Sbjct 27234 GATGCCCTCCACGCAGGCAAAGGCCAGCAGGCGCTGCGCAAAG 27276 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| ||||| |||||||| ||||| |||| ||| ||| |||| Sbjct 248255 TAGATGTTGCTGGTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCTT 248196 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 114036 || ||||||||||| |||| || |||||||| || Sbjct 248195 GCGGTGGGCATGGGCGCCACCAGCAGGCTGTTGCG 248161 >seq211 Length=228018 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 10789 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 10848 ||| ||||| || ||||| || || || ||| ||||| || |||||| || || || Sbjct 20951 ATCGAAGCGGCCGGGGCGCAGCAGCGCTGGGTCCAGGATGTCGGCGCGGTTGGTTGCTGC 20892 Query 10849 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 10908 |||||||| |||||| || | | |||||||| ||||||||||||| || || || | Sbjct 20891 GATGACAATGATGCCGGTGTTGCCCTCAAAGCCGTCCATCTCAGTCAGCAGCTGGTTAAG 20832 Query 10909 GGTTTGTTCGCGTTCATCATT 10929 || || ||||| || || || Sbjct 20831 TGTCTGCTCGCGCTCGTCGTT 20811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597343385253440