Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq78 104 2e-17 seq654 102 8e-17 seq1064 96.9 3e-15 seq415 96.9 3e-15 seq1211 82.4 8e-11 >seq78 Length=354265 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | ||| || || ||||||||||||||||| || | |||||| | || Sbjct 344586 AGCACGAGGTGCAGCGTTGACTCCTTTTGAATGTTGTAATCAGCCAAGGTGCGGCCATCC 344527 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | ||||| ||||||||||| || ||||| || || || || Sbjct 344526 TCCAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCTGGGGGAATACCCTCCTTGTCC 344467 Query 64352 TG 64353 || Sbjct 344466 TG 344465 >seq654 Length=867 Score = 102 bits (112), Expect = 8e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | ||||| || || | ||| || || || || |||||||| || || Sbjct 500 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCC 441 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| || ||||||||||||||| | || || ||||||||||| ||||| Sbjct 440 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGAGGG 381 Query 64337 ATTCCT 64342 || ||| Sbjct 380 ATGCCT 375 >seq1064 Length=71438 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | ||| || || || || |||||||| || || Sbjct 28483 CCACCGCGCAGGCGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 28424 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||||| | || || ||||||||||| ||| | || || ||||||||||||||||| Sbjct 28423 AGGGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGAGGG 28364 Query 64337 ATTCCT 64342 || ||| Sbjct 28363 ATGCCT 28358 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || |||| ||| || || || || |||||||| || || Sbjct 27420 CCACCGCGCAGGCGCAGCACCAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 27361 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || || ||||||||||| ||| | || || ||||||||||| || ||| Sbjct 27360 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGA 27301 Query 64337 ATTCCT 64342 || ||| Sbjct 27300 ATGCCT 27295 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | ||| || || || || ||||||||||| || Sbjct 27952 CCACCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGCC 27893 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || || ||||||||||| ||| | || || ||||||||||| ||||| Sbjct 27892 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGAGGG 27833 Query 64337 ATTCCT 64342 || ||| Sbjct 27832 ATGCCT 27827 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | ||| || || || || |||||||| || || Sbjct 26307 CCACCGCGCAGGCGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 26248 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || || ||||||||||| ||| | || || ||||||||||| || ||| Sbjct 26247 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGA 26188 Query 64337 ATTCCT 64342 || ||| Sbjct 26187 ATGCCT 26182 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| || || | ||| || || || || |||||||| || || Sbjct 26862 CCACCGCGCAGGCGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 26803 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || || ||||||||||| ||| | || || ||||||||||| || ||| Sbjct 26802 AGGGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGGGGA 26743 Query 64337 ATTCCT 64342 || ||| Sbjct 26742 ATGCCT 26737 >seq415 Length=64367 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | ||||| || || | ||| || || || || |||||||| || || Sbjct 63714 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCC 63773 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| |||| || |||||||| |||||| | || || ||||||||||| ||||| Sbjct 63774 AGGGTGCGGCCGTCCTCCAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCAGGAGGG 63833 Query 64337 ATTCCT 64342 || ||| Sbjct 63834 ATGCCT 63839 >seq1211 Length=79214 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || |||||||| || || | |||||| |||| || ||||||||||||||| | Sbjct 79214 TCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAG 79155 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 || || ||||||||||| ||||| || ||| Sbjct 79154 ATCAGGCGCTGCTGGTCAGGAGGGATGCCT 79125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499636256073920