Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq723 125 7e-24 >seq723 Length=331235 Score = 125 bits (138), Expect = 7e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 93960 CAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAA 94019 |||| |||| |||| || || | |||| ||||||||| || || |||| || Sbjct 245890 CAAGAACGACAGCATCGAGGGCATCTACGACTCCCTCAAGGAGTGCGCTGTCATCAGCAA 245949 Query 94020 ATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCG 94079 | || || || ||||| ||||| ||||| || | || |||| ||| ||||||||| Sbjct 245950 GTCTGCCGGAGGTATCGGCATCAGCATCCACAACATCCGCGCCACGGGCAGCTACATCCG 246009 Query 94080 CGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGC 94139 ||| ||||| |||||| ||||||| | || || ||||| || || |||||| || | || Sbjct 246010 CGGCACCAACGGCACCAGCAACGGCATTGTGCCCATGCTGCGCGTGTTCAACGACACCGC 246069 Query 94140 GCGCTACGTGGACCAGG 94156 ||||||||||||||||| Sbjct 246070 GCGCTACGTGGACCAGG 246086 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 94153 CAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGAC 94212 ||||| || || | | | ||||| | ||||| |||| || ||||| |||||||| ||| Sbjct 246274 CAGGGCGGCGGCAAGCGCAAGGGCGCGTTCGCCATCTACCTGGAGCCGTGGCACGCCGAC 246333 Query 94213 GTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGAC 94272 | | | | ||| |||| |||||||||||||| || || | | ||| | ||| Sbjct 246334 ATATTTGAGTGGCTGGACATGCGCAAGAACCACGGCAAGGAGGAGGCGCGCGCCCGCGAC 246393 Query 94273 CTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCC 94332 || ||||||| || ||| | ||||| || ||| | ||||| |||| ||| ||| | Sbjct 246394 CTGTTCTACGGCCTGTGGATCAACGACCTGTTCATGCAGCGCGTGGAGAGCAACACCGAC 246453 Query 94333 TGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGG 94382 ||||| || || || || ||||| || || ||| | ||||| || || Sbjct 246454 TGGAGCCTGTTCTGCCCGAATGAGGCGCCTGGGCTGGCTGACGTGTGGGG 246503 Score = 89.7 bits (98), Expect = 5e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 95095 CTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCG 95154 ||||| ||||| ||||||||||| || ||| |||||||| ||||||||||||| Sbjct 248170 CTGCTGGTGGCGCCCATGCCCACCGCAAGCACCAGCCAGATCCTGGGCAACAACGAGTGC 248229 Query 95155 TTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTC 95214 ||||| |||| |||| |||| | ||| | || ||||| ||| || ||| |||| Sbjct 248230 TTCGAGCCCTACACCAGCAACATCTACGTGCGCCGCGTGCTGAGCGGCGAGTTCACCGTG 248289 Query 95215 ATCAACAAGCACCTCCT 95231 ||||| ||||||| || Sbjct 248290 GTCAACCAGCACCTGCT 248306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494714740233280