Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq723 96.9 3e-15 seq78 82.4 7e-11 >seq723 Length=331235 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 146061 CTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAA 146120 |||||||||||| ||||||||| || ||||| | || || | |||||||||| | Sbjct 248298 CTGGTTGACCACGGTGAACTCGCCGCTCAGCACGCGGCGCACGTAGATGTTGCTGGTGTA 248239 Query 146121 CGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGC 146180 |||||||| |||||||||| || || ||||| || | ||||| |||||| ||| Sbjct 248238 GGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCTTGCGGTGGGCATGGGCGC 248179 Query 146181 CACCAGCAAAGAGTTTCTCACGCCGT 146206 |||||||| ||| | |||||||| Sbjct 248178 CACCAGCAGGCTGTTGCGCACGCCGT 248153 Score = 91.5 bits (100), Expect = 1e-13 Identities = 117/160 (73%), Gaps = 6/160 (4%) Strand=Plus/Minus Query 146635 GCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCG 146694 || || || |||| ||| || || || ||||| || || |||| ||| ||||| Sbjct 247007 GCAATGGATGCCAGGTTGCACACTGCGGTCTCATCAGGCGCGGTGTACTCCACGATCTCC 246948 Query 146695 GCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTG---TTG 146751 | ||| |||||||||||||||||| |||||| || | ||||| || |||| ||| Sbjct 246947 GTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCT---CTTGCGGTTG 246891 Query 146752 CAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGA 146791 ||| |||||||||||||||||| || ||||| |||| Sbjct 246890 CAGCTGTCCTTGTAGAGCATGTAGGGGTTGCCGGTCTCGA 246851 >seq78 Length=354265 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||| | || | ||| ||||| |||||||| |||||||| ||| ||||| | Sbjct 344589 CGCAGCACGAGGTGCAGCGTTGACTCCTTTTGAATGTTGTAATCAGCCAAGGTGCGGCCA 344530 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||| | |||||||| || || || || ||||||||| Sbjct 344529 TCCTCCAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCTGGGGGAATACCCTCCTTG 344470 Query 127019 TCC 127021 ||| Sbjct 344469 TCC 344467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475492668936320