Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq21 590 8e-164 >seq21 Length=95773 Score = 590 bits (654), Expect = 8e-164 Identities = 747/1019 (73%), Gaps = 6/1019 (1%) Strand=Plus/Minus Query 6263 AGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGTTGATCC 6322 |||||||| || | || |||||||||||||| ||||| || ||| |||||||| || Sbjct 41277 AGAGCGTTACCACGAGGTAATACTTCTTCAGGGAATACTAAACGTTCGTGTGGTTGGTCT 41218 Query 6323 ACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTC 6382 | |||||||| ||||| | ||||||||| |||| || || || |||||||| || Sbjct 41217 TGAGCAGCCATCCAAGCACGAATACCTTCATTTAATAAAATATTTTTAGTATAGAAAGTT 41158 Query 6383 TCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGG 6442 ||||||||||| || || || || | || |||||||| || ||||||||||| | | | Sbjct 41157 TCGAACTCTGGGTCTTCAGCAGCACGAATTTCTTGTGATACGAAGTCATAAGCACGTAAG 41098 Query 6443 TTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGGAACAAAC 6502 || || || | ||||| || |||||| ||| |||| || || | || ||||| || Sbjct 41097 TTTAGAGCTAAACCAACAACACCAATCGCAGACATCCATAGTCCTGTTACCGGAACTAAT 41038 Query 6503 AGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAG 6562 | ||||||||| || |||||||| || || ||| || | |||||| || || |||||| Sbjct 41037 AACATAAAGAAGTGAAGCCAACGTTTGTTTGAGAAAGCAACACCAAAAATTTGTGACCAG 40978 Query 6563 AAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTG 6622 ||||| || || || ||||| || || || || || |||| || || | ||| || | Sbjct 40977 AAACGGTTCGCAGTTACCATAGAGTAAGTTTCTTCAGCTTGAGTTGGGTTAAATGCACGG 40918 Query 6623 AAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATA 6682 || || |||| |||||||||||||| || || || || |||||||||||||||||| Sbjct 40917 AATGTGTTTGCACCATCACCATCTTCAAATAATGTGTTTTCAACAGTAGCACCGTGAATA 40858 Query 6683 GCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGGGTTGAGC 6742 ||||| | || || ||||||| | ||| || |||||||||||||| || ||||| | Sbjct 40857 GCACATAATAAAGCAGCACCTAAAACACCAGCAACACCCATCATATGGAATGGGTTTAAT 40798 Query 6743 GTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAACACCAAAC 6802 |||||||| || || || || | ||| | | || ||||| || || ||||||||||| Sbjct 40797 GTCCAGTTATGAAAACCTTGGAAGAACAAAATAAAACGGAAGATAGCAGCAACACCAAAA 40738 Query 6803 GACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGACACAAAG 6862 || ||||||||||||| || ||||| | || || || | || || || ||||| Sbjct 40737 CTAGGTGCAAAGAACCAACCTGATTGTCCTAATGGGTAAATTAAGAATACTGAAACAAAA 40678 Query 6863 ACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAGACGTGCG 6922 |||||||| ||| | ||||| || || |||||||| ||||| | ||| |||||| Sbjct 40677 ACAGCAATAGGAGCTGAAAAAGCAATAGCATTGTAAGGACGTAAGTTTACTGAACGTGCA 40618 Query 6923 ATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGCCACAAAA 6982 || ||||| || || | |||||| || || | |||| | || || | || ||||| Sbjct 40617 ATTTCAAATTGACGTAACATGAATCCAATTAAACCAAAAGAACCATGTAAAGCAACAAAT 40558 Query 6983 GGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGGACCCCAT 7042 | ||||| || || | ||| ||| || ||||| || |||||||||||||||||| Sbjct 40557 GTCCATAAACCACCTAATTGACACCAACGAGTAAAATCACCTTGAGCTTCTGGACCCCAT 40498 Query 7043 A-GAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGTAAGGAA 7101 | ||| || || || ||| | | | || ||||| ||||| || |||||||| | ||| Sbjct 40497 AAGAATAA-TAATGAGTGTGCCATACTGTTTGCAGGTGTTGAAACTGCAGCAGTTAAGAA 40439 Query 7102 ATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGACGAAAGT 7161 ||||| || || | || |||| ||| | ||| || || ||||| || || ||||| Sbjct 40438 GTTACAACCTTCTAAGTAAGAAGTAGCTAACCCATGTGTATACCATGATGTTACAAAAGT 40379 Query 7162 TGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAGACCTGA 7221 ||| || || | |||||| || ||||| | ||| ||| ||| || |||||||||||||| Sbjct 40378 TGTACCAGTAAACCAACCTCCTAGTGCAAAGTATGCACAAGGAAAAAGAAGAAGACCTGA 40319 Query 7222 CCAACCAACAAAAACGAACCTATCACG-CTTAAGCCAGTCATC-GAGTACATCAAACCA 7278 |||||| ||||| ||||| | || | | ||| ||||||||| | || |||||||||| Sbjct 40318 CCAACCTACAAATACGAAACGGTCTTGACGTAA-CCAGTCATCAGCGT-CATCAAACCA 40262 Score = 401 bits (444), Expect = 8e-107 Identities = 369/467 (79%), Gaps = 0/467 (0%) Strand=Plus/Minus Query 7550 GGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACGGTTGAGC 7609 |||||||||||||| ||||| |||||||| |||||||| || | ||||||||||| Sbjct 17840 GGGAAGTTGTGAGCGTTACGTTCGTGCATAACTTCCATACCTAAGTTAGCACGGTTGATG 17781 Query 7610 ACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTTGAAGTTG 7669 | ||| ||||| ||||| | ||||||||||| ||||| | || |||||||||||| Sbjct 17780 ATGTCAGCCCATGTGTTTAAAACACGACCTTGTGAATCAACAACTGATTGGTTGAAGTTG 17721 Query 7670 AAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATGCCAACA 7729 |||||||| |||||||| ||||| || || ||| | |||||||||||| || || ||| Sbjct 17720 AAACCGTTAAGGTTGAAAGCCATAGTTGAAATACCTAAAGCAGTGAACCAAATACCTACA 17661 Query 7730 ACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGG 7789 |||||||| || || | ||||||||| | ||||| ||||||||||| |||||||||||| Sbjct 17660 ACTGGCCAAGCAGCTAAGAAGAAGTGTAATGAACGAGAGTTGTTGAAAGAAGCGTATTGG 17601 Query 7790 AAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGA 7849 ||||| | |||||||||||| ||||| || || ||||||||||| || |||||||||||| Sbjct 17600 AAGATTAAACGACCAAAGTAACCGTGTGCGGCTACGATGTTGTAAGTTTCTTCTTCTTGA 17541 Query 7850 CCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAG 7909 ||||| || || || | ||| || || ||||| |||||||| | | ||| || Sbjct 17540 CCGAATTTGTATCCTTCGTTAGCAGATTCGTTTTCAGTTGTTTCACGGATTAAAGATGAA 17481 Query 7910 GTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACGCCC 7969 || || | ||||| ||||| ||| ||| | ||||||||||| |||||||| || || Sbjct 17480 GTAACTAATGAACCGTGCATAGCAGAGAATAATGAACCACCAAATACACCAGCTACACCT 17421 Query 7970 AGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGAC 8016 | ||||||||| |||||||| || ||||| || || |||||||| || Sbjct 17420 AACATGTGGAAAGGGTGCATAAGAATGTTATGTTCAGCTTGGAAAAC 17374 Score = 163 bits (180), Expect = 4e-35 Identities = 180/237 (76%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 8294 TGGAGACCAATAGCGTTAGAAGAAGGAACAACAGCACCAGAGATGATGTTGTTGCCATAC 8353 || ||||| |||||||| |||| |||||| ||||||||||||||||||||||| || || Sbjct 13309 TGCAGACCGATAGCGTTTGAAGTAGGAACTACAGCACCAGAGATGATGTTGTTTCCGTAT 13250 Query 8354 ATGAGCGAACCAGCGACGGGTTCACGGATGCCGTCAATGTCCACAGGAGGAGCAGCGACG 8413 | | ||||||| || || |||||||| || || || || || ||||||||||||| | Sbjct 13249 AATAATGAACCAGAAACTGGCTCACGGATACCATCGATATCTACTGGAGGAGCAGCGATG 13190 Query 8414 AAAGCGACGATGAA-ACAAATAGCAGCAGCGAGCAGCGTAGGAATCATCAGGACACCGAA 8472 ||||||| |||||| || | || ||||| | | ||||| ||||| | ||||| || Sbjct 13189 AAAGCGATGATGAATACTGA-AGTAGCAGTTAATAATGTAGGGATCATGATCACACCAAA 13131 Query 8473 CCAACCGACATACAGACGATTGTTGGTGGAGGTTACCCAGTTACAGAATTGTTCCCA 8529 |||||||| || | ||| || | || || || | ||| | |||||| || |||| Sbjct 13130 CCAACCGATGTATAAACGGTTTTCAGTAGAAGTGATCCACTCACAGAAACGTGCCCA 13074 Score = 136 bits (150), Expect = 5e-27 Identities = 111/135 (82%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 8020 CATGTAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACC 8079 |||| ||||||| || || || || || | ||||||| ||||||||||||||||||| || Sbjct 16261 CATGAAGTTGAAAGTTCCTGAAATACCTAAAGGCATACCGTCAGAGAAAGAACCTTGTCC 16202 Query 8080 GAAAGGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACA 8139 || ||| |||| || ||||||||||| || || |||||||| |||||||| |||||| Sbjct 16201 GATAGGGTAGATGATGAATACAGCAGTAGCAGCTGCAACTGGTGCAGAGTAAGCTACAGC 16142 Query 8140 GATCCAGGGACGCAT 8154 ||||| |||||||| Sbjct 16141 AATCCAAGGACGCAT 16127 Score = 125 bits (138), Expect = 9e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 8151 GCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAGATACCGATCA 8210 ||||||||| ||||||||| | ||||||||||||||||||||| ||||||| | | Sbjct 14815 GCATACCTAAACGGTAAGATAATTCCCACTCACGACCCATGTAACAGCAGATACCTAAGA 14756 Query 8211 GGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCAAGAGAAG 8270 |||||| | | | | |||| |||||||||||||||| | ||||||||| | ||||| Sbjct 14755 AGAAGTGACAAACGATTAATTGGTAAGGACCACCGTTGTATAACCACTCATCTAAAGAAG 14696 Query 8271 CTGCTTCCCAGATGGGATAGAA 8292 | |||||||| || || ||||| Sbjct 14695 CAGCTTCCCAAATTGGGTAGAA 14674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622114161665920