Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq787 96.9 4e-15 seq723 91.5 2e-13 >seq787 Length=122967 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || ||| ||| || ||||| || ||| |||||| || || |||||| || || ||| Sbjct 88056 AAGTCTGTGTGCAGGCCCTCATCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGCCCGGGC 88115 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 ||||| || |||||||| | |||||| || || || || ||| ||||||||||| ||| Sbjct 88116 ATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCTGAGAAGAAGATGCCC 88175 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 ||||| ||| | || | || ||||| |||||| Sbjct 88176 TCCACGGCGGCGTAGGCCACCAGGCGCTCCGCAAAG 88211 >seq723 Length=331235 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 127516 CACAGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 127575 ||| ||||| || ||| || ||||| || | | |||||| || || |||||| || Sbjct 27114 CACCGCAAAGTCAGTGTGCAGGCCCTCATCCCTGCTGATGAGCTCGTTAGAGAAGGTGAG 27173 Query 127576 ACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAA 127635 || ||||| || ||||||||||| | |||||| || || || || ||| |||||| Sbjct 27174 GCCCGGCATAAGGCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGTG 27233 Query 127636 GATCCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAG 127678 ||| |||||||| || || || || | || |||| |||||| Sbjct 27234 GATGCCCTCCACGCAGGCAAAGGCCAGCAGGCGCTGCGCAAAG 27276 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 115855 AGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTC 115914 ||||||| ||||| || ||||| || || ||| | || ||||||||| | Sbjct 248303 AGGTGCTGGTTGACCACGGTGAACTCGCCGCTCAGCACGCGGCGCACGTAGATGTTGCTG 248244 Query 115915 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 115974 ||||| ||||| |||||||| ||||| |||| ||| ||| ||| || ||||||||| Sbjct 248243 GTGTAGGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGGCTGGTGCTTGCGGTGGGCATG 248184 Query 115975 GGTGCCATGAGAAGGCTGTTGCG 115997 || |||| || ||||||||||| Sbjct 248183 GGCGCCACCAGCAGGCTGTTGCG 248161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613496709026880