Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq787 93.3 7e-14 seq723 89.7 8e-13 >seq787 Length=122967 Score = 93.3 bits (102), Expect = 7e-14 Identities = 124/170 (73%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 |||| ||||| | ||||| |||||| ||||| || || ||||| ||||||||| | Sbjct 88042 ACAGCAGGCAGCCGAAGTCTGTGTGCAGGCCCTCATCGCGGCTGATGAGCTCGTTGGAGA 88101 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034 | |||| || ||||||| || ||| |||||||| || ||||| ||| |||| | Sbjct 88102 AGGTGAGCCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGCTGCCT 88160 Query 160035 TAAAA-AAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAA 160083 | || ||||| ||||||||||| || | ||||| || | ||| |||| Sbjct 88161 GAGAAGAAGATGCCCTCCACGGCGGCGTAGGCCACCAGGCGCTCCGCAAA 88210 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 159734 CCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAG 159793 || || |||||||||| || |||||||||||| |||||||| | ||| ||| | | Sbjct 87642 CCCAGCGCCGCCAGCAGCCGGTCTGCCACAAACTCGATGTACTGGCTCATGAGCTTGCCG 87701 Query 159794 TTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACC 159853 || || || | || ||||| ||||| || ||| |||||||| ||| ||||| ||| Sbjct 87702 TTCATGCCGATGAGGTCCACGGGCAGCGCGTCGCACACAAACTCCTGCTCGATCTCCACC 87761 Query 159854 GCTTCGGTCACAATCT 159869 || ||||| | |||| Sbjct 87762 GCCTCGGTGATGATCT 87777 >seq723 Length=331235 Score = 89.7 bits (98), Expect = 8e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 204845 GCCAGATTGCACACCGCGGGTCTG-TGTGGCTCGCTCACCTCCACGATCTCGGTGCACAA 204903 ||||| |||||||| |||| ||| | ||| || | |||||||||||| ||||||| Sbjct 246998 GCCAGGTTGCACACTGCGG-TCTCATCAGGCGCGGTGTACTCCACGATCTCCGTGCACAG 246940 Query 204904 GTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCTT 204963 ||| | |||||| | |||| | ||||||||| ||||||||| ||| |||||| Sbjct 246939 GTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGGTTGCAGCTGTCCTT 246880 Query 204964 GTACATCATGAACGGCATTCCGTTCTCCATCTG 204996 ||| | |||| | || | ||| |||| ||||| Sbjct 246879 GTAGAGCATGTAGGGGTTGCCGGTCTCGATCTG 246847 Score = 84.2 bits (92), Expect = 3e-11 Identities = 177/256 (69%), Gaps = 15/256 (6%) Strand=Plus/Plus Query 159818 AGCGCTTCCGACAGA--AACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCG-AG 159874 |||||||| ||||| ||||||| ||| | ||| ||||| || | ||| | ||| | Sbjct 27013 AGCGCTTC--ACAGATGAACTCCTGCTCCAGCTCCACCGCCTC---CCCAACCAGCGCAT 27067 Query 159875 ACACGTTCG--TACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGT 159932 ||| | || | |||| |||| || | | | | | |||| || |||||||| Sbjct 27068 GCACCTCCGCCTCCCCCAGCTT---CACAGCCAGCTGCCCATACAGCAGCACCGCAAAGT 27124 Query 159933 CGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGA 159992 | |||||| ||||| |||| ||||| |||||| || | | ||||||||||||| | Sbjct 27125 CAGTGTGCAGGCCCTCATCCCTGCTGATGAGCTCGTTAGAGAAGGTGAGGCCCGGCATAA 27184 Query 159993 TCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCC 160051 || ||| |||||||| || |||| |||| |||| ||| || ||| |||||| Sbjct 27185 GGCCCCGCTTCTTGAGCCAGAAGATGG-CGCAGAAGCTGCCGGAGAAGTGGATGCCCTCC 27243 Query 160052 ACGGCCGCAAACGCCA 160067 ||| ||||| |||| Sbjct 27244 ACGCAGGCAAAGGCCA 27259 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 205067 TTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATTTTTTG 205126 || |||||||||||| |||| || || ||||||| |||||| || | || Sbjct 246530 TTGGTGTACAGCGCCTCAAACTCCTCGCCCCACACGTCAGCCAGCCCAGGCGCCTCATTC 246471 Query 205127 GGACACATCAGAGACCACATC--TGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGA 205184 || || | ||| ||| || || | ||| ||| | || ||| ||||||||| ||| Sbjct 246470 GGGCAGAACAGGCTCCAG-TCGGTGTTGCTCTC-CACGCGCTGCATGAACAGGTCGTTGA 246413 Query 205185 TCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCA 205244 ||||||||||||| ||||| || ||||| | | || | || ||||||| || Sbjct 246412 TCCACAGGCCGTAGAACAGGTCGCGGGCGCGCGCCTCCTCCTTGCCGTGGTTCTTGCGCA 246353 Query 205245 AGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTC 205281 ||||||||| | |||||||||||||||||||| Sbjct 246352 TGTCCAGCCACTCAAATATGTCGGCGTGCCACGGCTC 246316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795141602846080