Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1064 104 6e-17 seq78 104 6e-17 seq415 102 2e-16 seq654 96.9 8e-15 seq1203 91.5 3e-13 >seq1064 Length=71438 Score = 104 bits (114), Expect = 6e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| |||||||||||||| || Sbjct 25859 CGCAGGCGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTG 25800 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| ||||||||||| || |||||||| || ||||||||||| || Sbjct 25799 CGGCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTCAGG 25750 Score = 102 bits (112), Expect = 2e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| |||||||||||||| || Sbjct 28477 CGCAGGCGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTG 28418 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 | ||||| ||||||||||| || || ||||| || ||||||||||| ||| Sbjct 28417 CGCCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGGGA 28367 Score = 100 bits (110), Expect = 7e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| |||||||||||||| || Sbjct 26301 CGCAGGCGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTG 26242 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| ||||||||||| || || ||||| || ||||||||||| || Sbjct 26241 CGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGG 26192 Score = 100 bits (110), Expect = 7e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| |||||||||||||| || Sbjct 26856 CGCAGGCGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTG 26797 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| ||||||||||| || || ||||| || ||||||||||| || Sbjct 26796 CGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGG 26747 Score = 100 bits (110), Expect = 7e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| |||||||||||||| || Sbjct 27414 CGCAGGCGCAGCACCAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTG 27355 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| ||||||||||| || || ||||| || ||||||||||| || Sbjct 27354 CGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGG 27305 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| |||||| ||||||| || Sbjct 27946 CGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAATCAGCCAGGGTG 27887 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 | ||||| ||||||||||| || || ||||| || ||||||||||| ||| Sbjct 27886 CGGCCATCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCAGGA 27836 >seq78 Length=354265 Score = 104 bits (114), Expect = 6e-17 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || ||||| || || ||||||||||| | |||||| |||||||| || | ||||| Sbjct 344587 CAGCACGAGGTGCAGCGTTGACTCCTTTTGAATGTTGTAATCAGCCAAGGTGCGGCCATC 344528 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 ||||||||||| || || |||||||| ||||||||||| || Sbjct 344527 CTCCAGCTGCTTGCCTGCAAAGATGAGGCGCTGCTGGTCTGG 344486 >seq415 Length=64367 Score = 102 bits (112), Expect = 2e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| |||||||||||||| || Sbjct 63720 CGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTG 63779 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 | || || ||||||||||| ||||| ||||| || ||||||||||| ||| Sbjct 63780 CGGCCGTCCTCCAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTCAGGA 63830 >seq654 Length=867 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || ||||| || || |||||||| |||| ||||||||| |||| || Sbjct 494 CGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTG 435 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGA 199519 | || || ||||||||||| ||||| ||||| || ||||||||||| ||| Sbjct 434 CGGCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCAGGA 384 >seq1203 Length=119104 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| |||||||||||||| ||||| || || ||||||||||| || ||||||| Sbjct 89817 CCTTCTGGATGTTGTAGTCAGCCAGGGTCCTGCCGTCCTCCAGCTGCTTACCAGCGAAGA 89876 Query 199500 TGAGACGCTGCTGGTCCGGA 199519 | ||||||||||| || ||| Sbjct 89877 TCAGACGCTGCTGATCAGGA 89896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178900936451656