Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1064 96.9 4e-15 seq654 96.9 4e-15 seq415 87.8 2e-12 seq1211 86.0 7e-12 >seq1064 Length=71438 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| |||| |||||| ||||| |||||||| | || ||||| | Sbjct 25853 CGCAGCACCAGGTGCAGTGTAGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCA 25794 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || ||||||||||| ||||| |||| |||||||||||| Sbjct 25793 TCCTCCAGCTGCTTGCCAGCGAAGATCAGGCGCTGCTGGTC 25753 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| || | || |||||| ||||| |||||||| | || |||||| | Sbjct 28471 CGCAGCACCAGGTGTAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGCCCA 28412 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGG 46481 || || ||||||||||| || || |||| |||||||||||||| Sbjct 28411 TCCTCCAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCGG 28369 >seq654 Length=867 Score = 96.9 bits (106), Expect = 4e-15 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||||| || ||||| || Sbjct 488 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCG 429 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || |||||||||||||| || |||| |||||||||||| Sbjct 428 TCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTC 388 >seq415 Length=64367 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| | || ||||| || Sbjct 63726 CGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGGCCG 63785 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTC 46479 || || |||||||| ||||| || |||| |||||||||||| Sbjct 63786 TCCTCCAGCTGCTTACCGGCAAAGATCAGGCGCTGCTGGTC 63826 >seq1211 Length=79214 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||||| || ||||| |||| || |||||||||||||| || Sbjct 79214 TCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCAAAG 79155 Query 46463 ATCAAGCGCTGCTGGTC 46479 |||| |||||||||||| Sbjct 79154 ATCAGGCGCTGCTGGTC 79138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565228734423360