Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq787 129 6e-25 seq654 100 3e-16 seq1064 93.3 4e-14 seq415 91.5 1e-13 seq723 86.0 6e-12 >seq787 Length=122967 Score = 129 bits (142), Expect = 6e-25 Identities = 128/166 (77%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 || ||| || ||| | ||||| |||| |||||| || | | ||||| |||||| Sbjct 88039 TGTACAGCAGGCAGCCGAAGTCTGTGTGCAGGCCCTCATCGCGGCTGATGAGCTCGTTGG 88098 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 ||| || | ||||||||||||||||| || |||||||| || |||||| ||| |||| Sbjct 88099 AGAAGGTGAGCCCGGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGC 88158 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC 133049 | || ||||||| |||||| ||||| ||| | |||||||||||||| Sbjct 88159 CTGAGAAGAAGATGCCCTCCACGGCGGCGTAGGCCACCAGGCGCTC 88204 >seq654 Length=867 Score = 100 bits (110), Expect = 3e-16 Identities = 96/122 (79%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 |||| || ||||| ||||| || || | || ||||| |||||||| |||| ||||||| Sbjct 380 TCCCTCCTGACCAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGCCGCACCC 439 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 | ||||||||||||||| ||||| | |||||||| |||||||||| || | |||| Sbjct 440 TGGCCGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCG 499 Query 38470 GC 38471 || Sbjct 500 GC 501 >seq1064 Length=71438 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || || ||| | ||||| ||||| || || | ||| ||||| |||||||| || | ||| Sbjct 25741 GGCATCCCCCCTGACCAGCAGCGCCTGATCTTCGCTGGCAAGCAGCTGGAGGATGGCCGC 25800 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| |||||||||||||| ||||| | || ||||| |||||||||| || | Sbjct 25801 ACCCTGGCTGACTACAACATCCAGAAGGAGTCTACACTGCACCTGGTGCTGCGCCTGCGT 25860 Query 38466 GGCGGC 38471 |||||| Sbjct 25861 GGCGGC 25866 Score = 89.7 bits (98), Expect = 5e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 38356 CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415 ||||||| ||||| || || | || ||||| |||||||| || | ||||||||| | Sbjct 28369 CCGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACCCTGGCTG 28428 Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||||||||| ||||| | ||||| || |||||||||| || | || |||| Sbjct 28429 ACTACAACATCCAGAAGGAGTCCACGCTACACCTGGTGCTGCGCCTGCGCGGTGGCC 28485 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || |||||| | ||||| ||||| || || | || ||||| |||||||| || | ||| Sbjct 26183 GGCATTCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGC 26242 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| |||||||||||||| ||||| | ||||| || |||||||||| || | Sbjct 26243 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTACACCTGGTGCTGCGCCTGCGC 26302 Query 38466 GGCGGC 38471 || ||| Sbjct 26303 GGTGGC 26308 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || |||||| | ||||| ||||| || || | || ||||| |||||||| || | ||| Sbjct 26738 GGCATTCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGC 26797 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| |||||||||||||| ||||| | ||||| || |||||||||| || | Sbjct 26798 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTACACCTGGTGCTGCGCCTGCGC 26857 Query 38466 GGCGGC 38471 || ||| Sbjct 26858 GGTGGC 26863 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || |||||| | ||||| ||||| || || | || ||||| |||||||| || | ||| Sbjct 27296 GGCATTCCCCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGC 27355 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| |||||||||||||| ||||| | ||||| || |||||||||| || | Sbjct 27356 ACCCTGGCTGACTACAACATCCAGAAGGAGTCCACGCTTCACCTGGTGCTGCGCCTGCGC 27415 Query 38466 GGCGGC 38471 || ||| Sbjct 27416 GGTGGC 27421 Score = 82.4 bits (90), Expect = 8e-11 Identities = 92/122 (75%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 |||| || ||||| ||||| || || | || ||||| |||||||| || | ||||||| Sbjct 27832 TCCCTCCTGACCAGCAGCGCCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACCC 27891 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 | || ||||||||||| ||||| | |||||||| |||||||||| || | || | Sbjct 27892 TGGCTGATTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGTG 27951 Query 38470 GC 38471 || Sbjct 27952 GC 27953 >seq415 Length=64367 Score = 91.5 bits (100), Expect = 1e-13 Identities = 96/125 (77%), Gaps = 1/125 (1%) Strand=Plus/Minus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 |||| || ||||| ||||| || || | || || || |||||||| |||| ||||||| Sbjct 63834 TCCCTCCTGACCAGCAGCGCCTGATCTTTGCCGGTAAGCAGCTGGAGGACGGCCGCACCC 63775 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 | |||||||||||||| ||||| | |||||||| |||||||||| || | |||| Sbjct 63774 TGGCTGACTACAACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCG 63715 Query 38470 GCCGC 38474 || || Sbjct 63714 GCTGC 63710 >seq723 Length=331235 Score = 86.0 bits (94), Expect = 6e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 133269 GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCAC 133328 ||| ||| || |||| || || ||||||||||||||| |||| || ||||||||||| Sbjct 28281 GAAGCGCACGGCCAGGTTCTCCAGCACGATGCCGTCGCTGCCGGCAAAGAAGGCCAGCAC 28340 Query 133329 GTGCTTGATGAAATGGCGCTCGTTGTC 133355 || ||||||||| || |||||||||| Sbjct 28341 GTACTTGATGAAGTGCTGCTCGTTGTC 28367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500164247045120