Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq960 93.3 5e-14 seq23 93.3 5e-14 seq1200 86.0 8e-12 seq275 82.4 1e-10 seq61 82.4 1e-10 >seq960 Length=371212 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/170 (72%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 7946 CGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCC 8005 |||||||| ||||| || ||||| ||||||||||| |||||||| || || || Sbjct 345644 CGCTTTGCGTCAAAGACGGTGTTGCGCGGGTTCATGGCCACCTGGTTCTTTGCTGCATCG 345585 Query 8006 CCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCT 8065 ||||| || || || | || || || || || || || || || || | || || Sbjct 345584 CCGATGAGGCGCTC---TGTGTCTGTGAAGGCCACATAGGACGGTGTGGTCCTGTTGCCC 345528 Query 8066 TGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 |||||||| || ||||| || |||||||| || ||||| || || ||||| Sbjct 345527 TGGTCGTTTGCGATAATCTCCACGCGGTCATTCTGCCACACACCCACGCA 345478 >seq23 Length=225717 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/170 (72%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 7946 CGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCC 8005 |||||||| ||||| || ||||| ||||||||||| |||||||| || || || Sbjct 58896 CGCTTTGCGTCAAAGACGGTGTTGCGCGGGTTCATGGCCACCTGGTTCTTTGCTGCATCG 58837 Query 8006 CCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCT 8065 ||||| || || || | || || || || || || || || || || | || || Sbjct 58836 CCGATGAGGCGCTC---TGTGTCTGTGAAGGCCACATAGGACGGTGTGGTCCTGTTGCCC 58780 Query 8066 TGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 |||||||| || ||||| || |||||||| || ||||| || || ||||| Sbjct 58779 TGGTCGTTTGCGATAATCTCCACGCGGTCATTCTGCCACACACCCACGCA 58730 >seq1200 Length=181467 Score = 86.0 bits (94), Expect = 8e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 131783 GATGCCGTGGCCGAGTGGTCTAAGGCGCCAGATTAAGGCTCTGGTTCGGAAGAGCGCAGG 131842 |||| ||||||||||||||||||||||| |||| |||||| || || ||| ||||||| Sbjct 35216 GATGGCGTGGCCGAGTGGTCTAAGGCGCTGGATTTAGGCTCCAGTCCGCAAGGGCGCAGG 35157 Query 131843 TTCAAATCCTGTCGGCATCA 131862 ||| || |||| || ||||| Sbjct 35156 TTCGAACCCTGCCGCCATCA 35137 >seq275 Length=238179 Score = 82.4 bits (90), Expect = 1e-10 Identities = 188/283 (66%), Gaps = 0/283 (0%) Strand=Plus/Plus Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||| | || || ||||| | || || || || || | || || | | ||| Sbjct 102741 GTGGAGAACACCTGCTCCTTCTTGGTGGGGATGGTGGTGTTGCGGGGGATCAGCACCGTC 102800 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || | || || ||| || || || || ||||| || ||||| |||| || | |||| Sbjct 102801 ATCACGCCGCCGGCAGTCTCCAGGCCCAGCGACAGCGGCGTCACATCCAGCAGCAGCAGG 102860 Query 6989 TCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTAT 7048 || || || ||| || || || || | |||||| || || || | || |||||| Sbjct 102861 TCCTGCACCTTCTCGCCTCCCTCGCCAGTCAGGATGGCTGCCTGCACTGCTGCGCCGTAT 102920 Query 7049 GCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGAT 7108 || || |||||||||||||| || | || ||| || || ||||| || | ||| Sbjct 102921 GCCACGGCCTCATCGGGGTTGATGGACTTGCACAGCTCCTTGCCGTTGAAGAAGTCCTGC 102980 Query 7109 AACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCA 7151 | || || || | || ||||| || || || || || |||| Sbjct 102981 AGCAGCTGCTGCACCTTGGGGATGCGGGTGGAGCCGCCCACCA 103023 >seq61 Length=469512 Score = 82.4 bits (90), Expect = 1e-10 Identities = 188/283 (66%), Gaps = 0/283 (0%) Strand=Plus/Minus Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||| | || || ||||| | || || || || || | || || | | ||| Sbjct 101750 GTGGAGAACACCTGCTCCTTCTTGGTGGGGATGGTGGTGTTGCGGGGGATCAGCACCGTC 101691 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || | || || ||| || || || || ||||| || ||||| |||| || | |||| Sbjct 101690 ATCACGCCGCCGGCAGTCTCCAGGCCCAGCGACAGCGGCGTCACATCCAGCAGCAGCAGG 101631 Query 6989 TCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTAT 7048 || || || ||| || || || || | |||||| || || || | || |||||| Sbjct 101630 TCCTGCACCTTCTCGCCTCCCTCGCCAGTCAGGATGGCTGCCTGCACTGCTGCGCCGTAT 101571 Query 7049 GCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGAT 7108 || || |||||||||||||| || | || ||| || || ||||| || | ||| Sbjct 101570 GCCACGGCCTCATCGGGGTTGATGGACTTGCACAGCTCCTTGCCGTTGAAGAAGTCCTGC 101511 Query 7109 AACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCA 7151 | || || || | || ||||| || || || || || |||| Sbjct 101510 AGCAGCTGCTGCACCTTGGGGATGCGGGTGGAGCCGCCCACCA 101468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635121939229120