Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq723 96.9 4e-15 seq787 82.4 9e-11 >seq723 Length=331235 Score = 96.9 bits (106), Expect = 4e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 117270 CACGGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAG 117329 ||| ||||| || ||| || |||||||| | | || || || || |||||| || Sbjct 27114 CACCGCAAAGTCAGTGTGCAGGCCCTCATCCCTGCTGATGAGCTCGTTAGAGAAGGTGAG 27173 Query 117330 GCCTGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAA 117389 ||| ||||| || ||||||||||| | ||| | || |||||||| ||||||||| Sbjct 27174 GCCCGGCATAAGGCCCCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCGGAGAAGTG 27233 Query 117390 GATACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 ||| |||||||| || ||||| || | ||||||| || ||| Sbjct 27234 GATGCCCTCCACGCAGGCAAAGGCCAGCAGGCGCTGCGCAAAG 27276 Score = 93.3 bits (102), Expect = 5e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || || || ||||||| ||||| || || |||||||| | |||||||| | Sbjct 247013 GGCAGCGCAATGGATGCCAGGTTGCACACTGCGGTCTCATCAGGCGCGGTGTACTCCACG 246954 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 || || || |||| |||| | ||| || || |||| |||| ||||| ||||| | Sbjct 246953 ATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGCGG 246894 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAG 106632 ||||| |||||||||||||||||||| | || ||||| |||| | || ||| Sbjct 246893 TTGCAGCTGTCCTTGTAGAGCATGTAGGGGTTGCCGGTCTCGATCTGCGCCTCGAG 246838 >seq787 Length=122967 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 ||| || |||||||| ||| || || || || |||||| || || |||||||| || Sbjct 88064 GTGCAGGCCCTCATCGCGGCTGATGAGCTCGTTGGAGAAGGTGAGCCCGGGCATGAGGCC 88123 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| || ||||||||||| |||||||| Sbjct 88124 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGCTGCCTGAGAAGAAGATGCCCTCCACGGC 88183 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAG 117432 || | || | |||||||| || ||| Sbjct 88184 GGCGTAGGCCACCAGGCGCTCCGCAAAG 88211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589970711328320