Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq21 544 1e-149 >seq21 Length=95773 Score = 544 bits (602), Expect = 1e-149 Identities = 733/1018 (72%), Gaps = 2/1018 (0%) Strand=Plus/Plus Query 181420 ATGGTTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTC 181479 ||||||||| | |||||||||| | | ||||| || || ||||| || ||||| Sbjct 40261 ATGGTTTGATGACGCTGATGACTGGTTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTC 40320 Query 181480 TGGACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTAC 181539 || || ||||||||||| ||| || ||||| | || || ||| | ||||| || || Sbjct 40321 AGGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACAAC 40380 Query 181540 TTTTGTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTT 181599 |||||| || || ||||| || || || || || |||| ||| | || ||| ||| || Sbjct 40381 TTTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAACTT 40440 Query 181600 CCTTACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTT-T 181658 | | || || || || ||||| ||||| || ||||| || || || || | ||| | Sbjct 40441 CTTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGGCACACTC-ATTATTATTCTTAT 40499 Query 181659 GGGGTCCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTT 181718 ||||||| |||||||| || ||||| || ||| ||| | || || | ||| | | Sbjct 40500 GGGGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACAT 40559 Query 181719 TTGTGGCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTG 181778 |||| || | || || | || | | | || || || ||| | | ||||||||| ||| Sbjct 40560 TTGTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAATTG 40619 Query 181779 CTCGTCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTAT 181838 | ||| | | | || || |||||||| ||||||||||| | |||||||||||| | Sbjct 40620 CACGTTCAGTAAACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCTGTTT 40679 Query 181839 TCGTCTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTT 181898 | || || ||||| | || || || | |||||||| ||||||||||||| || |||| Sbjct 40680 TTGTTTCAGTATTCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCTAGTT 40739 Query 181899 TCGGTGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGC 181958 | ||||| || || || ||||| || || | ||| |||| || |||||||| ||||| Sbjct 40740 TTGGTGTTGCTGCTATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACTGGACAT 40799 Query 181959 TCAATCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAA 182018 | || || |||||||||||||||||||||||| | | |||| || ||| | | ||| | Sbjct 40800 TAAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTA 40859 Query 182019 TTCACGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCA 182078 ||||||||| || || || || || | | | |||| ||||| ||||| || ||| Sbjct 40860 TTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGATGGTGCAAACACATTCC 40919 Query 182079 AAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCT 182138 ||||| | ||||||||| |||||||| || || ||||| || |||||||| |||| Sbjct 40920 GTGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCTATGGTAACTGCGAACCGTTTCT 40979 Query 182139 GGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCT 182198 |||| || || || ||| |||| || || || | ||| | || ||||||||| | | Sbjct 40980 GGTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGTTGGCTTCACTTCTTTATGTTAT 41039 Query 182199 TTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACC 182258 | ||||| || | || || |||| | | || ||| || ||||| | ||||| ||| Sbjct 41040 TAGTTCCGGTAACAGGACTATGGATGTCTGCGATTGGTGTTGTTGGTTTAGCTCTAAACT 41099 Query 182259 TTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGA 182318 | |||||||||||||| ||||| |||||||| | || | ||||||||||||||||| | Sbjct 41100 TACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCTGCTGAAGACCCAGAGTTCGAAA 41159 Query 182319 CGTTCTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCG 182378 | ||||| || || || ||| | || ||||||||| | ||||| ||| | || | | Sbjct 41160 CTTTCTATACTAAAAATATTTTATTAAATGAAGGTATTCGTGCTTGGATGGCTGCTCAAG 41219 Query 182379 ATCAACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 | |||||||| || || || |||||||| ||||||||||| | |||||||| || Sbjct 41220 ACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCT 41277 Score = 399 bits (442), Expect = 3e-106 Identities = 379/484 (78%), Gaps = 0/484 (0%) Strand=Plus/Plus Query 180252 GTTTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAGGT 180311 ||||||||||| || || ||||| || |||||||| ||||||||| | || ||||| ||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 180312 GTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGGTTCACTGGTTACCTCTTCACTGGTT 180371 || || || |||||| | ||||| || |||||||||||| | ||||| || || | | Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 180372 CGTGAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAG 180431 |||||||| ||||||| || || ||| | || ||||| || |||||||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 180432 ACCTACAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCG 180491 || ||||||||||| || ||||| || ||||| |||||| | |||||||| || || || Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 180492 TTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGG 180551 ||||||||||| |||||| | ||||||||| | || || ||||| || || || || ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 180552 TTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAG 180611 |||||||| | || | || ||||| |||||||| |||||||||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 180612 TCCATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCT 180671 || | ||||| ||||||||||| | ||||| ||||| ||| | ||||||| ||| Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 180672 GGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTGGCA 180731 | |||||||||||||||||||| ||||| ||||||||||||||| | ||| | ||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCATTAGACTTAGCA 17853 Query 180732 GCTG 180735 ||| Sbjct 17854 TCTG 17857 Score = 161 bits (178), Expect = 1e-34 Identities = 174/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 179748 TTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCTG 179807 ||||| |||||| | || ||||| | ||||| | || |||||||||| || || | Sbjct 13083 TTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGATC 13142 Query 179808 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 179866 ||||| || || | || | || ||| || | |||||| |||| |||||||||||||| Sbjct 13143 ATGATCCCTACATTATTAACTGCTACT-TCAGTATTCATCATCGCTTTCATCGCTGCTCC 13201 Query 179867 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 179926 || || || |||||||| |||||||| || || |||||||| | | || || ||||| Sbjct 13202 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAA 13261 Query 179927 CATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCA 179974 ||||||||||||||| || |||||| |||| ||||| || ||||| || Sbjct 13262 CATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 113 bits (124), Expect = 6e-20 Identities = 108/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 180114 ATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATT 180172 ||||| || ||||| ||| ||||| || ||||| ||||| || || || |||||||||| Sbjct 16127 ATGCGTCCTTGGAT-TGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATT 16185 Query 180173 CCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGG 180232 | || |||| ||| |||| |||||||| |||||||||| ||||| | || ||||| || Sbjct 16186 CATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGG 16245 Query 180233 CACCTTCAACTACATG 180248 || ||||||| |||| Sbjct 16246 AACTTTCAACTTCATG 16261 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 179976 TTCTATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTC 180035 ||||| || || |||||||| || || | || |||||| | || ||||||||||||| | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 180036 CAACTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAA 180095 ||| | |||| | |||||| | | || |||| ||||||||||||||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 180096 CTTTCTTATCGCTTGGGTATGC 180117 | ||||| || || ||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610386362214720