Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq21 502 3e-137 >seq21 Length=95773 Score = 502 bits (556), Expect = 3e-137 Identities = 737/1043 (71%), Gaps = 25/1043 (2%) Strand=Plus/Plus Query 170526 TGGTTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCT 170585 |||||||||| ||| ||||||||| ||| ||||| ||||| |||| ||||| Sbjct 40262 TGGTTTGATGACGCTGATGACTGGTTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCA 40321 Query 170586 GGTCTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACC 170645 |||||| | ||| | |||||||||||| | || | || |||||||| || || || Sbjct 40322 GGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACAACT 40381 Query 170646 TTCGTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTC 170705 || || |||||||||||||||||||| | ||| | || || | || || ||||||||| Sbjct 40382 TTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 40441 Query 170706 CTAACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTC--TTCTGTTCCTTT 170763 |||| || |||||||| ||||||| || |||| || | || | | ||| | | Sbjct 40442 TTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGG--CACACTCATTATTATTCTTAT 40499 Query 170764 GGGGACCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACT 170823 |||| || ||||| |||||| ||| |||||||| ||| | || |||||||||| | Sbjct 40500 GGGGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACAT 40559 Query 170824 TTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCG 170883 |||| || |||||||| ||||| | || || |||||| | | |||||||| || | Sbjct 40560 TTGTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAATTG 40619 Query 170884 CAGGACTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCT 170943 || | ||| | | | |||||||| || | || || || ||| ||| || || | Sbjct 40620 CACGTTCAGTAAACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCTGTTT 40679 Query 170944 TCACTAGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCAT 171003 | | | || | || || ||| |||| || |||||||||| ||||| | Sbjct 40680 TTGTTTCAGTATTCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCTAGTT 40739 Query 171004 TCGGTGTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACAT 171063 | ||||| || || || || |||| ||| || ||| | |||||||| || ||| |||| Sbjct 40740 TTGGTGTTGCTGCTATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACTGGACAT 40799 Query 171064 TGAATCCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCA 171123 | || ||||| || |||||||||||||| || | |||||| || ||||||||||| | Sbjct 40800 TAAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTA 40859 Query 171124 TTCATGGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATA 171183 |||| ||||| || || | |||||||| | ||||| || |||| Sbjct 40860 TTCACGGTGCTACTGTTGAAAACACATTATTTGAAG------------ATGGTGAT---- 40903 Query 171184 AAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTA 171243 | |||| ||||||||||| ||| | || || || | |||||||||||| || Sbjct 40904 -GGTGCAAA----CACATTCCGTGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCTA 40958 Query 171244 TGATTACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGAT 171303 || | || || ||| | ||||||||||| || |||||| |||||||||| |||||| | | Sbjct 40959 TGGTAACTGCGAACCGTTTCTGGTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGTT 41018 Query 171304 TTTTACACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTA 171363 | |||||| ||||||| || ||||| || | || | |||| || | || ||| Sbjct 41019 GGCTTCACTTCTTTATGTTATTAGTTCCGGTAACAGGACTATGGATGTCTGCGATTGGTG 41078 Query 171364 TCGTAGGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAG 171423 | || ||| |||| || ||| | | || || || || ||||| ||||| || | || | Sbjct 41079 TTGTTGGTTTAGCTCTAAACTTACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCTG 41138 Query 171424 CAGAAGACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGA 171483 | ||||||||||||||||| |||||||| ||||| ||||| | | ||||||||||| Sbjct 41139 CTGAAGACCCAGAGTTCGAAACTTTCTATACTAAAAATATTTTATTAAATGAAGGTATTC 41198 Query 171484 GAGCATGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGT 171543 | || |||||| | | ||||||||||| || || |||||||| |||||||| | Sbjct 41199 GTGCTTGGATGGCTGCTCAAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTAT 41258 Query 171544 TACCAAGAGGTAACGCACTTTAA 171566 |||| | |||||||| || ||| Sbjct 41259 TACCTCGTGGTAACGCTCTATAA 41281 Score = 390 bits (432), Expect = 1e-103 Identities = 378/486 (78%), Gaps = 0/486 (0%) Strand=Plus/Plus Query 169904 TCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAG 169963 ||||||||||||| || ||||||||||| ||||| |||||||||||| ||| ||||| | Sbjct 17372 TCGTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTG 17431 Query 169964 GAATGTTCGGAGGATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAA 170023 | | || || || || |||||||| || ||||| |||||| | |||||||||||| ||| Sbjct 17432 GTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAA 17491 Query 170024 TCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAG 170083 || | |||||||| || | || || ||| | || || || ||||| |||||||||| Sbjct 17492 TCCGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAG 17551 Query 170084 AAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTT 170143 |||| |||||||| ||||| ||||||||||||||||||||| | |||||||| || |||| Sbjct 17552 AAACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTT 17611 Query 170144 CATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTAT 170203 | ||||||||||| | ||||||||||| |||| | || || |||||| || | | Sbjct 17612 CTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTT 17671 Query 170204 GGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACC 170263 |||| || || | ||||| | || ||||| |||||| | || ||||||||||| |||| Sbjct 17672 GGTTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACC 17731 Query 170264 AATCAGTTGTTGATGCTAACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAG 170323 |||||||||||||| | | || | | ||||||| ||| | | ||| | | Sbjct 17732 AATCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTG 17791 Query 170324 CAAACTTGGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAG 170383 | ||||| ||||||||||||||||| ||| | || || |||||||||||| ||||| ||| Sbjct 17792 CTAACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCATTAGACTTAG 17851 Query 170384 CATCTG 170389 |||||| Sbjct 17852 CATCTG 17857 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 169402 TTTTGCGAGTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTA 169461 || || |||||| | || || || | ||| | | || | |||||||||||||| | Sbjct 13083 TTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGATC 13142 Query 169462 ATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCGTTGCATTCATTGCAGCACCT 169521 ||||| || ||| | || || | || |||||| | || ||||| || || ||| Sbjct 13143 ATGATCCCTACATTATTAACTGCTACTTCAGTATTCATCATCGCTTTCATCGCTGCTCCT 13202 Query 169522 CCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTTCTTTCTTGTATGGTAACAAC 169581 || || |||||||| || ||| | || ||||| | ||||| || || || || |||||| Sbjct 13203 CCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAAC 13262 Query 169582 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATCGGACTACA 169628 |||||||||||||| || ||||| | |||||||||||||| || || Sbjct 13263 ATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 118 bits (130), Expect = 1e-21 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 169768 ATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTC 169827 |||||||||||||| ||| || |||||||||||||| | ||||| ||||||||| Sbjct 16127 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 16186 Query 169828 TTAGTATACCCATTTGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGT 169887 | | ||||| | || || ||||| |||||||| |||||||| ||||||| ||||| Sbjct 16187 ATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGGA 16246 Query 169888 ACTTTCAACTTTATG 169902 ||||||||||| ||| Sbjct 16247 ACTTTCAACTTCATG 16261 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 169630 TTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGTGGTCCTTAT 169689 ||||||||||| |||||||| || || | ||||| ||||| || || ||||||||||| Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 169690 CAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGACAGTGGGAA 169749 || || | | | |||||| | | ||||||| |||||||| | |||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 169750 CTATCATACAGATTAGGAATGC 169771 |||| ||| | ||||| |||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579202895461120