Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq21 558 4e-154 >seq21 Length=95773 Score = 558 bits (618), Expect = 4e-154 Identities = 728/1004 (73%), Gaps = 6/1004 (1%) Strand=Plus/Plus Query 169319 GATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGTCTACTTCTTCTT 169378 ||||||||| | | ||||| || ||||| | |||||||| ||||| |||||| || Sbjct 40277 GATGACTGGTTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCAGGTCTTCTTCTTTTT 40336 Query 169379 CCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTGG 169438 || ||| || |||| | ||||| ||| | ||||||||| | ||||| || || ||| Sbjct 40337 CCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACAACTTTTGTAACATCATGG 40396 Query 169439 TACACCCACGGACTCGCTTCCAGTTACTTAGAAGGCGCTAACTTCCTCACTGCTGCTGTC 169498 || || || || | ||| | |||||||||||| ||||||| | |||||||| || Sbjct 40397 TATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAACTTCTTAACTGCTGCAGTT 40456 Query 169499 AGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCACAA 169558 |||||||| || ||||| ||||||| | | || |||||||||||||||| ||| Sbjct 40457 TCAACACCTGCAAACAGTATGGCACACTCATTATTATTCTTATGGGGTCCAGAAGCTCAA 40516 Query 169559 GGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCATGGT 169618 || ||||| ||| ||||||||||| |||||| | |||| ||||| || | |||||| Sbjct 40517 GGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACATTTGTTGCTTTACATGGT 40576 Query 169619 GCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTATTGGCATC 169678 | |||| || ||||| |||||| | | || |||||| | |||||| | | | Sbjct 40577 TCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAATTGCACGTTCAGTAAACTTA 40636 Query 169679 CGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTG--TCAGTGTCTTTC 169736 |||||||| ||||||||||| || || | |||||||||||| |||| ||||| ||| Sbjct 40637 CGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCTGTTTTTGTTTCAGT---ATTC 40693 Query 169737 TT-ATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCA 169795 || || |||||| | ||||| || ||||||||||| || ||||| || | || Sbjct 40694 TTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCTAGTTTTGGTGTTGCTGCT 40753 Query 169796 ATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCAC 169855 |||||| | || | |||||| | ||||| || || |||||||| || || |||||||| Sbjct 40754 ATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACTGGACATTAAACCCATTCCAT 40813 Query 169856 ATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACA 169915 ||||||||||| || || | || || | || || | | |||||| || |||| ||| Sbjct 40814 ATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTATTCACGGTGCTACT 40873 Query 169916 GTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCG 169975 || || |||||||| | |||||| ||||| ||||| || ||| || ||| | | Sbjct 40874 GTTGAAAACACATTATTTGAAGATGGTGATGGTGCAAACACATTCCGTGCATTTAACCCA 40933 Query 169976 ACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 170035 || || | ||||| ||||| |||||||| ||||| ||||| |||||||| || || || Sbjct 40934 ACTCAAGCTGAAGAAACTTACTCTATGGTAACTGCGAACCGTTTCTGGTCACAAATTTTT 40993 Query 170036 GGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 170095 ||| |||| || || ||||| ||||||||||| || || ||||| || || || || | Sbjct 40994 GGTGTTGCTTTCTCAAACAAACGTTGGCTTCACTTCTTTATGTTATTAGTTCCGGTAACA 41053 Query 170096 GGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGAT 170155 || || |||| || | ||||| || |||| | ||||| || | |||||||| || Sbjct 41054 GGACTATGGATGTCTGCGATTGGTGTTGTTGGTTTAGCTCTAAACTTACGTGCTTATGAC 41113 Query 170156 TTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAA 170215 ||||| || || || | || || ||||| ||||| || || || ||||| || ||| Sbjct 41114 TTCGTATCACAAGAAATTCGTGCTGCTGAAGACCCAGAGTTCGAAACTTTCTATACTAAA 41173 Query 170216 AACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGAA 170275 || || |||| |||||||| ||||||| ||| |||| || || |||||||| ||| Sbjct 41174 AATATTTTATTAAATGAAGGTATTCGTGCTTGGATGGCTGCTCAAGACCAACCACACGAA 41233 Query 170276 AACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 || | ||||| |||||||| | || | |||||||| || Sbjct 41234 CGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCT 41277 Score = 394 bits (436), Expect = 1e-104 Identities = 368/468 (79%), Gaps = 0/468 (0%) Strand=Plus/Plus Query 168367 GTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTGCTGGG 168426 || ||||||||||| || || ||||| ||||| || ||||| ||| | || || ||||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 168427 GTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTCTCGTT 168486 ||||||||||| || || |||||||||||| || |||||||| ||| | | Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 168487 AGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAGAAGAA 168546 | || || ||||||| |||||| ||| | || ||||| ||||| |||||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 168547 ACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCA 168606 || ||||||||||||||||| || |||||||| |||||||| ||||||||||||||||| Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 168607 TTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGG 168666 ||||||||||| || || || ||||||||| | ||||| ||||| ||||| || || ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 168667 TTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAG 168726 ||||| || | || | || || ||||| |||||||| |||||||||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 168727 TCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCT 168786 || | ||||| || |||||||| || ||||| ||||| || | | ||||| ||| Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 168787 GGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCA 168834 | ||||||||||||||||| || |||||||| |||||||||||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCA 17841 Score = 149 bits (164), Expect = 7e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 167862 TTTCTGCGAGTGGGTAACATCAACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACT 167921 |||||| |||||| | || || ||| | ||||| | || |||||||||| || || | Sbjct 13082 TTTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGAT 13141 Query 167922 GATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 167980 ||||| || || | || | || ||| || || |||||| |||| ||| ||||||||| Sbjct 13142 CATGATCCCTACATTATTAACTGCTACT-TCAGTATTCATCATCGCTTTCATCGCTGCTC 13200 Query 167981 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 168040 | || || || ||||| || |||||||| || || |||||||| | | || || |||| Sbjct 13201 CTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACA 13260 Query 168041 ACATCATCTCTGGTGCAGTTGTCCCTTCTTCTAATGCTATTGGACTTCA 168089 |||||||||||||||| || || ||| |||| || ||||| || || || Sbjct 13261 ACATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 168091 TTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGTTGTATAACGGTGGTCCTTTC 168150 ||||| || || |||||||| || || | ||||||||||| || ||||||||||||| | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 168151 CAACTAGTAGTCTTTCACTTCCTCATCGGTATCTATGCATACATGGGACGTGAATGGGAA 168210 ||| || | || | ||||||| || | ||||||| |||||||| ||||| |||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 168211 CTTTCATATCGTTTAGGTATGC 168232 | || || ||||||||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Score = 105 bits (116), Expect = 8e-18 Identities = 109/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 168222 TTTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGC 168281 ||||| |||||||| ||||| ||| || |||||||||||||| || || || | ||| Sbjct 16122 TTTAG--ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 16179 Query 168282 AGTATTCCTAGTGTATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAAT 168341 |||||| | | || ||| |||| |||||| ||||||||| | ||||| | || || Sbjct 16180 TGTATTCATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTAT 16239 Query 168342 CTCAGGAACATTCAACTACATG 168363 |||||||| ||||||| |||| Sbjct 16240 TTCAGGAACTTTCAACTTCATG 16261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574463776501440