Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq21 345 5e-90 >seq21 Length=95773 Score = 345 bits (382), Expect = 5e-90 Identities = 368/486 (76%), Gaps = 0/486 (0%) Strand=Plus/Plus Query 168993 TCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAG 169052 |||| |||||||| || || |||||||||||||| || ||||| ||| ||| ||||| | Sbjct 17372 TCGTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTG 17431 Query 169053 GTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAA 169112 || | || ||||| || ||||||| || ||||| |||||| | || || || ||| ||| Sbjct 17432 GTGTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAA 17491 Query 169113 TCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAG 169172 || | || || ||||| | |||||| ||| | || ||||| |||||||||||||||| Sbjct 17492 TCCGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAG 17551 Query 169173 AAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAA 169232 |||| || || || || || ||||| || ||||| ||| | ||||||||||| || || Sbjct 17552 AAACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTT 17611 Query 169233 GTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTAT 169292 |||||||||||| | | ||||||||| |||| | | ||||||||| || | | Sbjct 17612 CTTTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTT 17671 Query 169293 GGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACC 169352 |||| || || | ||||| | || ||||| |||||| | ||||| || ||||| |||| Sbjct 17672 GGTTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACC 17731 Query 169353 AATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAG 169412 |||||||||| ||| | ||| | | ||||||| |||| | | ||| | | Sbjct 17732 AATCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTG 17791 Query 169413 CAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAG 169472 | ||| | ||||||||||| ||||| || ||||||||||||||||||||| ||||||||| Sbjct 17792 CTAACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCCATTAGACTTAG 17851 Query 169473 CATCTG 169478 |||||| Sbjct 17852 CATCTG 17857 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 168533 GGTTGGTTCGGTGTCTTAATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTT 168592 |||||||| ||||| | |||||||| |||||||| || | || ||||| | Sbjct 13125 GGTTGGTTTGGTGTGATCATGATCCCTACATTATTAACTGCTACTTCAGTATTCATCATC 13184 Query 168593 GCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCT 168652 || || || ||||| || || || |||||||| || ||| | || || || | ||| | Sbjct 13185 GCTTTCATCGCTGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCA 13244 Query 168653 CTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGT 168712 || | || ||||||||||||||||| ||||| || ||||| |||||||||| |||||| Sbjct 13245 TTATTATACGGAAACAACATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGT 13304 Query 168713 CTACA 168717 || || Sbjct 13305 CTGCA 13309 Score = 114 bits (126), Expect = 1e-20 Identities = 112/142 (79%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 168719 TTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTAC 168778 |||||||||||||||||||| ||| | | |||||||||||||| || |||||||||||| Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 168779 CAGTTGGTAATCTTCCACTTCCTAATCGGAATCT-CTGCCTACATGGGTAGACAGTGGGA 168837 || || | | | |||||| | | || |||| ||| ||||||||| | ||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTG-TTACATGGGTCGTGAGTGGGA 14792 Query 168838 ATTATCATACAGACTAGGTATG 168859 |||||| ||| | |||||||| Sbjct 14793 ATTATCTTACCGTTTAGGTATG 14814 Score = 109 bits (120), Expect = 6e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 168857 ATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTC 168916 ||| | |||||||| ||| ||||| || |||||||| | || || ||| |||||| Sbjct 16127 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 16186 Query 168917 CTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGA 168976 | | ||||| | || || |||||||||||||| ||||||||| |||| ||||| ||| Sbjct 16187 ATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGGA 16246 Query 168977 ACATTCAACTTCATG 168991 || |||||||||||| Sbjct 16247 ACTTTCAACTTCATG 16261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564431948048640